(26 nodes) Axon midline choice point recognition network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA10747	Sema domain-containing protein. (1636 aa)
	A0A0R3NN44	Uncharacterized protein, isoform A. (8901 aa)
	DpseGA13718	Uncharacterized protein, isoform B. (1616 aa)
	DpseGA25769	BTB domain-containing protein. (240 aa)
	DpseGA31686	Uncharacterized protein. (157 aa)
	DpseGA19383	Uncharacterized protein, isoform B. (746 aa)
	DpseGA19192	Spectrin beta chain; Belongs to the spectrin family. (2308 aa)
	DpseGA16742	Uncharacterized protein, isoform J. (1133 aa)
	DpseGA15168	Uncharacterized protein, isoform C. (2464 aa)
	DpseGA21564	Uncharacterized protein, isoform C. (666 aa)
	DpseGA14736	Uncharacterized protein. (391 aa)
	DpseGA14473	Uncharacterized protein. (623 aa)
	Sema-1a	Sema-1a, isoform D; Belongs to the semaphorin family. (854 aa)
	DpseGA15321	Uncharacterized protein. (192 aa)
	DpseGA17894	Uncharacterized protein. (1860 aa)
	A0A158SUH3	Uncharacterized protein. (392 aa)
	Q297P2	Uncharacterized protein, isoform B. (557 aa)
	Q295N4	Uncharacterized protein, isoform A. (422 aa)
	Q291P5	Roundabout, axon guidance receptor 2. (1398 aa)
	DpseGA28770	Uncharacterized protein. (1618 aa)
	N6WCZ8	Uncharacterized protein. (2217 aa)
	Dpse_fru	Fruitless, isoform C. (892 aa)
	B5E0T4	Uncharacterized protein, isoform Y. (966 aa)
	B5DXQ2	Rho GTPase-activating protein 39. (1376 aa)
	DpseGA28220	Guanylate cyclase. (1534 aa)
	DpseGA23566	eIF2B_5 domain-containing protein. (312 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NN44	DpseGA15168	A0A0R3NN44	A0A0R3P5T5	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform C.	0.648
A0A0R3NN44	DpseGA15321	A0A0R3NN44	Q29EV6	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.422
A0A0R3NN44	DpseGA19192	A0A0R3NN44	A0A0R3NYA3	Uncharacterized protein, isoform A.	Spectrin beta chain; Belongs to the spectrin family.	0.507
A0A158SUH3	DpseGA15321	A0A158SUH3	Q29EV6	Uncharacterized protein.	Uncharacterized protein.	0.517
A0A158SUH3	Q291P5	A0A158SUH3	Q291P5	Uncharacterized protein.	Roundabout, axon guidance receptor 2.	0.445
B5DXQ2	Q291P5	B5DXQ2	Q291P5	Rho GTPase-activating protein 39.	Roundabout, axon guidance receptor 2.	0.452
DpseGA10747	DpseGA15321	Q29CU7	Q29EV6	Sema domain-containing protein.	Uncharacterized protein.	0.520
DpseGA10747	Sema-1a	Q29CU7	Q29JT4	Sema domain-containing protein.	Sema-1a, isoform D; Belongs to the semaphorin family.	0.926
DpseGA14473	DpseGA19383	Q29K34	A0A0R3NUG0	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.446
DpseGA14473	Q291P5	Q29K34	Q291P5	Uncharacterized protein.	Roundabout, axon guidance receptor 2.	0.421
DpseGA14736	DpseGA16742	Q2M1E5	A0A0R3P5N2	Uncharacterized protein.	Uncharacterized protein, isoform J.	0.653
DpseGA14736	Q291P5	Q2M1E5	Q291P5	Uncharacterized protein.	Roundabout, axon guidance receptor 2.	0.630
DpseGA15168	A0A0R3NN44	A0A0R3P5T5	A0A0R3NN44	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform A.	0.648
DpseGA15168	DpseGA15321	A0A0R3P5T5	Q29EV6	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.409
DpseGA15168	DpseGA19192	A0A0R3P5T5	A0A0R3NYA3	Uncharacterized protein, isoform C.	Spectrin beta chain; Belongs to the spectrin family.	0.960
DpseGA15321	A0A0R3NN44	Q29EV6	A0A0R3NN44	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.422
DpseGA15321	A0A158SUH3	Q29EV6	A0A158SUH3	Uncharacterized protein.	Uncharacterized protein.	0.517
DpseGA15321	DpseGA10747	Q29EV6	Q29CU7	Uncharacterized protein.	Sema domain-containing protein.	0.520
DpseGA15321	DpseGA15168	Q29EV6	A0A0R3P5T5	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.409
DpseGA15321	DpseGA17894	Q29EV6	Q29D50	Uncharacterized protein.	Uncharacterized protein.	0.524