(23 nodes) Ciliary transition zone network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q294K4	Transmembrane protein 216. (136 aa)
	A0A0R3NHS3	Uncharacterized protein, isoform A. (767 aa)
	A0A0R3NI42	Uncharacterized protein, isoform D. (2255 aa)
	DpseGA21627	Uncharacterized protein. (177 aa)
	DpseGA19567	Uncharacterized protein, isoform B. (422 aa)
	DpseGA32508	DUF1619 domain-containing protein. (678 aa)
	DpseGA14315	Uncharacterized protein, isoform B. (1071 aa)
	DpseGA12602	Uncharacterized protein, isoform B. (2034 aa)
	DpseGA13412	Uncharacterized protein, isoform H. (472 aa)
	DpseGA27380	Uncharacterized protein. (1055 aa)
	DpseGA22380	Uncharacterized protein. (379 aa)
	DpseGA22296	Uncharacterized protein, isoform A. (1277 aa)
	B5DWH6	Transmembrane protein 216. (149 aa)
	B5DY10	Uncharacterized protein. (979 aa)
	Q28ZU7	5-azacytidine-induced protein 1. (1190 aa)
	Q291B3	Coiled-coil and C2 domain-containing protein 2A. (1349 aa)
	Q29AQ7	Uncharacterized protein. (135 aa)
	Q29AT0	Uncharacterized protein, isoform A. (238 aa)
	DpseGA13570	Uncharacterized protein. (392 aa)
	DpseGA13919	Uncharacterized protein. (703 aa)
	DpseGA16488	Uncharacterized protein. (180 aa)
	DpseGA12703	Uncharacterized protein. (342 aa)
	DpseGA12814	Uncharacterized protein. (742 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NHS3	DpseGA12602	A0A0R3NHS3	A0A0R3P4C0	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.456
A0A0R3NHS3	DpseGA13919	A0A0R3NHS3	Q29J74	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.424
A0A0R3NHS3	DpseGA19567	A0A0R3NHS3	A0A0R3NSL0	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.577
B5DWH6	B5DY10	B5DWH6	B5DY10	Transmembrane protein 216.	Uncharacterized protein.	0.797
B5DWH6	DpseGA12602	B5DWH6	A0A0R3P4C0	Transmembrane protein 216.	Uncharacterized protein, isoform B.	0.477
B5DWH6	DpseGA12703	B5DWH6	Q29NV2	Transmembrane protein 216.	Uncharacterized protein.	0.496
B5DWH6	DpseGA13919	B5DWH6	Q29J74	Transmembrane protein 216.	Uncharacterized protein.	0.723
B5DWH6	DpseGA21627	B5DWH6	A0A0R3NR02	Transmembrane protein 216.	Uncharacterized protein.	0.614
B5DWH6	DpseGA32508	B5DWH6	A0A0R3NVU3	Transmembrane protein 216.	DUF1619 domain-containing protein.	0.614
B5DWH6	Q291B3	B5DWH6	Q291B3	Transmembrane protein 216.	Coiled-coil and C2 domain-containing protein 2A.	0.794
B5DWH6	Q29AT0	B5DWH6	Q29AT0	Transmembrane protein 216.	Uncharacterized protein, isoform A.	0.792
B5DY10	B5DWH6	B5DY10	B5DWH6	Uncharacterized protein.	Transmembrane protein 216.	0.797
B5DY10	DpseGA12602	B5DY10	A0A0R3P4C0	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.669
B5DY10	DpseGA12703	B5DY10	Q29NV2	Uncharacterized protein.	Uncharacterized protein.	0.687
B5DY10	DpseGA12814	B5DY10	Q2M092	Uncharacterized protein.	Uncharacterized protein.	0.623
B5DY10	DpseGA13919	B5DY10	Q29J74	Uncharacterized protein.	Uncharacterized protein.	0.879
B5DY10	DpseGA21627	B5DY10	A0A0R3NR02	Uncharacterized protein.	Uncharacterized protein.	0.743
B5DY10	DpseGA32508	B5DY10	A0A0R3NVU3	Uncharacterized protein.	DUF1619 domain-containing protein.	0.743
B5DY10	Q291B3	B5DY10	Q291B3	Uncharacterized protein.	Coiled-coil and C2 domain-containing protein 2A.	0.885
B5DY10	Q294K4	B5DY10	Q294K4	Uncharacterized protein.	Transmembrane protein 216.	0.797