(15 nodes) Axonal growth cone network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R3NN44	Uncharacterized protein, isoform A. (8901 aa)
	DpseGA28881	Reticulon-like protein. (583 aa)
	DpseGA19383	Uncharacterized protein, isoform B. (746 aa)
	DpseGA22276	Uncharacterized protein, isoform B. (1132 aa)
	DpseGA25935	Uncharacterized protein, isoform A. (1706 aa)
	DpseGA29267	Uncharacterized protein. (808 aa)
	DpseGA29271	Uncharacterized protein, isoform B. (353 aa)
	DpseGA28329	LRRCT domain-containing protein. (725 aa)
	DpseGA23302	Uncharacterized protein. (407 aa)
	Q291P5	Roundabout, axon guidance receptor 2. (1398 aa)
	Q295N4	Uncharacterized protein, isoform A. (422 aa)
	Q296F8	Inositol 1,4,5-triphosphate receptor type 1. (2864 aa)
	Q299B9	Uncharacterized protein, isoform A. (531 aa)
	DpseGA13122	Uncharacterized protein. (1496 aa)
	DpseGA16381	Uncharacterized protein. (684 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA19383	DpseGA29267	A0A0R3NUG0	B5DMQ9	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.455
DpseGA19383	DpseGA29271	A0A0R3NUG0	B5DMR1	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform B.	0.455
DpseGA19383	Q291P5	A0A0R3NUG0	Q291P5	Uncharacterized protein, isoform B.	Roundabout, axon guidance receptor 2.	0.445
DpseGA23302	DpseGA29271	B5DS31	B5DMR1	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.899
DpseGA29267	DpseGA19383	B5DMQ9	A0A0R3NUG0	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.455
DpseGA29267	Q291P5	B5DMQ9	Q291P5	Uncharacterized protein.	Roundabout, axon guidance receptor 2.	0.401
DpseGA29271	DpseGA19383	B5DMR1	A0A0R3NUG0	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform B.	0.455
DpseGA29271	DpseGA23302	B5DMR1	B5DS31	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.899
Q291P5	DpseGA19383	Q291P5	A0A0R3NUG0	Roundabout, axon guidance receptor 2.	Uncharacterized protein, isoform B.	0.445
Q291P5	DpseGA29267	Q291P5	B5DMQ9	Roundabout, axon guidance receptor 2.	Uncharacterized protein.	0.401