(17 nodes) Apical protein localization network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5E1J5	Uncharacterized protein, isoform A. (424 aa)
	A0A0R3NI42	Uncharacterized protein, isoform D. (2255 aa)
	A0A0R3NMX5	annotation not available (373 aa)
	A0A0R3NP93	annotation not available (982 aa)
	A0A0R3NPD5	Uncharacterized protein, isoform B. (90 aa)
	DpseGA23154	Uncharacterized protein, isoform C. (340 aa)
	DpseGA18624	Uncharacterized protein, isoform C. (1562 aa)
	DpseGA18654	Uncharacterized protein, isoform B; Belongs to the PI3/PI4-kinase family. (2501 aa)
	DpseGA19201	Uncharacterized protein, isoform B. (369 aa)
	DpseGA11344	Uncharacterized protein, isoform B. (880 aa)
	B5E1G4	Uncharacterized protein, isoform A. (1517 aa)
	Q28ZQ8	Uncharacterized protein. (890 aa)
	Q295N3	V-type H+-transporting ATPase subunit E. (226 aa)
	Q296G6	Ras homolog enriched in brain. (182 aa)
	Q29C64	Uncharacterized protein. (1722 aa)
	DpseGA21885	Uncharacterized protein. (200 aa)
	DpseGA17100	Uncharacterized protein; Belongs to the MAGUK family. (1757 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NI42	A0A0R3NMX5	A0A0R3NI42	A0A0R3NMX5	Uncharacterized protein, isoform D.	annotation not available	0.516
A0A0R3NI42	A0A0R3NP93	A0A0R3NI42	A0A0R3NP93	Uncharacterized protein, isoform D.	annotation not available	0.649
A0A0R3NI42	B5E1G4	A0A0R3NI42	B5E1G4	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform A.	0.501
A0A0R3NI42	DpseGA11344	A0A0R3NI42	A0A0R3P3U6	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform B.	0.894
A0A0R3NI42	DpseGA17100	A0A0R3NI42	Q29HC6	Uncharacterized protein, isoform D.	Uncharacterized protein; Belongs to the MAGUK family.	0.899
A0A0R3NI42	DpseGA18624	A0A0R3NI42	A0A0R3NZI7	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform C.	0.632
A0A0R3NI42	DpseGA19201	A0A0R3NI42	A0A0R3P3L1	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform B.	0.768
A0A0R3NMX5	A0A0R3NI42	A0A0R3NMX5	A0A0R3NI42	annotation not available	Uncharacterized protein, isoform D.	0.516
A0A0R3NMX5	A0A0R3NP93	A0A0R3NMX5	A0A0R3NP93	annotation not available	annotation not available	0.476
A0A0R3NP93	A0A0R3NI42	A0A0R3NP93	A0A0R3NI42	annotation not available	Uncharacterized protein, isoform D.	0.649
A0A0R3NP93	A0A0R3NMX5	A0A0R3NP93	A0A0R3NMX5	annotation not available	annotation not available	0.476
A0A0R3NP93	B5E1G4	A0A0R3NP93	B5E1G4	annotation not available	Uncharacterized protein, isoform A.	0.595
A0A0R3NP93	DpseGA11344	A0A0R3NP93	A0A0R3P3U6	annotation not available	Uncharacterized protein, isoform B.	0.806
A0A0R3NP93	DpseGA17100	A0A0R3NP93	Q29HC6	annotation not available	Uncharacterized protein; Belongs to the MAGUK family.	0.606
A0A0R3NP93	DpseGA18624	A0A0R3NP93	A0A0R3NZI7	annotation not available	Uncharacterized protein, isoform C.	0.995
A0A0R3NP93	DpseGA19201	A0A0R3NP93	A0A0R3P3L1	annotation not available	Uncharacterized protein, isoform B.	0.994
A0A0R3NP93	Q28ZQ8	A0A0R3NP93	Q28ZQ8	annotation not available	Uncharacterized protein.	0.687
A0A0R3NPD5	DpseGA23154	A0A0R3NPD5	A0A0R3NW55	Uncharacterized protein, isoform B.	Uncharacterized protein, isoform C.	0.819
B5E1G4	A0A0R3NI42	B5E1G4	A0A0R3NI42	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform D.	0.501
B5E1G4	A0A0R3NP93	B5E1G4	A0A0R3NP93	Uncharacterized protein, isoform A.	annotation not available	0.595