(33 nodes) Sarcomere organization network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA16824	Uncharacterized protein, isoform F. (3710 aa)
	TpnI	Troponin I, isoform F. (208 aa)
	DpseGA25725	Uncharacterized protein, isoform B. (818 aa)
	DpseGA22938	Uncharacterized protein. (180 aa)
	DpseGA22407	Uncharacterized protein. (6349 aa)
	I5ANZ4	Ankyrin repeat domain-containing protein 17. (4199 aa)
	I5AP44	Uncharacterized protein, isoform A. (504 aa)
	N6V903	annotation not available (1267 aa)
	Q28ZF4	Uncharacterized protein. (187 aa)
	Q29B66	Uncharacterized protein. (4808 aa)
	Q29B99	Uncharacterized protein, isoform A. (608 aa)
	DpseGA16675	Uncharacterized protein, isoform A. (1924 aa)
	DpseGA10524	WD_REPEATS_REGION domain-containing protein. (608 aa)
	DpseGA12234	Uncharacterized protein, isoform F. (1099 aa)
	A0A0R3NJF4	Uncharacterized protein, isoform A. (2563 aa)
	A0A0R3NL77	Serine/threonine-protein phosphatase 2B regulatory subunit. (167 aa)
	A0A0R3NLC9	Uncharacterized protein, isoform I. (2060 aa)
	A0A0R3NMK2	Uncharacterized protein, isoform F. (3903 aa)
	A0A0R3NN08	Uncharacterized protein, isoform F. (418 aa)
	DpseGA25794	Uncharacterized protein, isoform L; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1963 aa)
	DpseGA16333	Uncharacterized protein, isoform B. (670 aa)
	DpseGA23031	Integrin beta; Belongs to the integrin beta chain family. (856 aa)
	DpseGA16131	Uncharacterized protein, isoform J. (1645 aa)
	TpnT	TpnT, isoform L. (397 aa)
	DpseGA13263	Uncharacterized protein, isoform A. (434 aa)
	DpseGA17729	Uncharacterized protein, isoform D. (710 aa)
	DpseGA21920	Uncharacterized protein, isoform A; Belongs to the integrin alpha chain family. (1368 aa)
	DpseGA19890	Uncharacterized protein, isoform B. (2865 aa)
	DpseGA13389	Uncharacterized protein. (1462 aa)
	rt	Protein O-mannosyltransferase 1; Rt/POMT1 and tw/POMT2 function as a protein O- mannosyltransferase in association with each other to generate and maintain normal muscle development; Belongs to the glycosyltransferase 39 family. (908 aa)
	DpseGA10211	Uncharacterized protein. (2402 aa)
	DpseGA14608	Uncharacterized protein, isoform A. (1097 aa)
	DpseGA18143	Uncharacterized protein, isoform D. (917 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NJF4	DpseGA10524	A0A0R3NJF4	Q29DL4	Uncharacterized protein, isoform A.	WD_REPEATS_REGION domain-containing protein.	0.629
A0A0R3NJF4	DpseGA19890	A0A0R3NJF4	Q29FI8	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.723
A0A0R3NJF4	DpseGA23031	A0A0R3NJF4	A0A0R3NYM7	Uncharacterized protein, isoform A.	Integrin beta; Belongs to the integrin beta chain family.	0.759
A0A0R3NLC9	DpseGA14608	A0A0R3NLC9	Q29LX2	Uncharacterized protein, isoform I.	Uncharacterized protein, isoform A.	0.468
A0A0R3NLC9	DpseGA18143	A0A0R3NLC9	Q29J93	Uncharacterized protein, isoform I.	Uncharacterized protein, isoform D.	0.521
A0A0R3NMK2	DpseGA22407	A0A0R3NMK2	B5DRZ6	Uncharacterized protein, isoform F.	Uncharacterized protein.	0.459
A0A0R3NMK2	DpseGA25794	A0A0R3NMK2	A0A0R3NS18	Uncharacterized protein, isoform F.	Uncharacterized protein, isoform L; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.407
A0A0R3NMK2	I5ANZ4	A0A0R3NMK2	I5ANZ4	Uncharacterized protein, isoform F.	Ankyrin repeat domain-containing protein 17.	0.535
DpseGA10524	A0A0R3NJF4	Q29DL4	A0A0R3NJF4	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein, isoform A.	0.629
DpseGA10524	DpseGA18143	Q29DL4	Q29J93	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein, isoform D.	0.454
DpseGA10524	DpseGA19890	Q29DL4	Q29FI8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein, isoform B.	0.715
DpseGA13263	N6V903	Q29J24	N6V903	Uncharacterized protein, isoform A.	annotation not available	0.552
DpseGA14608	A0A0R3NLC9	Q29LX2	A0A0R3NLC9	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform I.	0.468
DpseGA14608	DpseGA18143	Q29LX2	Q29J93	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform D.	0.500
DpseGA14608	DpseGA19890	Q29LX2	Q29FI8	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform B.	0.458
DpseGA14608	DpseGA23031	Q29LX2	A0A0R3NYM7	Uncharacterized protein, isoform A.	Integrin beta; Belongs to the integrin beta chain family.	0.567
DpseGA16131	DpseGA19890	A0A0R3NYX8	Q29FI8	Uncharacterized protein, isoform J.	Uncharacterized protein, isoform B.	0.478
DpseGA16333	DpseGA22407	A0A0R3NUG4	B5DRZ6	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.558
DpseGA16824	DpseGA23031	A0A0R3P5G6	A0A0R3NYM7	Uncharacterized protein, isoform F.	Integrin beta; Belongs to the integrin beta chain family.	0.458
DpseGA17729	DpseGA18143	Q29DT1	Q29J93	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform D.	0.521