(7 nodes) Phosphoserine residue binding network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA10976	WW domain-containing protein. (935 aa)
	B5DWF5	RNA polymerase-associated protein LEO1. (719 aa)
	DpseGA23238	Uncharacterized protein, isoform B. (616 aa)
	DpseGA22759	Uncharacterized protein, isoform A; Belongs to the 14-3-3 family. (250 aa)
	Q296W0	Uncharacterized protein, isoform A. (262 aa)
	DpseGA16406	Uncharacterized protein, isoform A. (646 aa)
	Q28XT6	RNA polymerase-associated protein RTF1. (764 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DWF5	DpseGA16406	B5DWF5	Q29PE7	RNA polymerase-associated protein LEO1.	Uncharacterized protein, isoform A.	0.873
B5DWF5	DpseGA23238	B5DWF5	B5DUZ9	RNA polymerase-associated protein LEO1.	Uncharacterized protein, isoform B.	0.873
B5DWF5	Q28XT6	B5DWF5	Q28XT6	RNA polymerase-associated protein LEO1.	RNA polymerase-associated protein RTF1.	0.873
DpseGA16406	B5DWF5	Q29PE7	B5DWF5	Uncharacterized protein, isoform A.	RNA polymerase-associated protein LEO1.	0.873
DpseGA22759	Q296W0	B5DKW8	Q296W0	Uncharacterized protein, isoform A; Belongs to the 14-3-3 family.	Uncharacterized protein, isoform A.	0.902
DpseGA23238	B5DWF5	B5DUZ9	B5DWF5	Uncharacterized protein, isoform B.	RNA polymerase-associated protein LEO1.	0.873
Q28XT6	B5DWF5	Q28XT6	B5DWF5	RNA polymerase-associated protein RTF1.	RNA polymerase-associated protein LEO1.	0.873
Q296W0	DpseGA22759	Q296W0	B5DKW8	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A; Belongs to the 14-3-3 family.	0.902