(40 nodes) Defense response to Gram-positive bacterium network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5DWB5	Uncharacterized protein. (383 aa)
	CecI	Cecropin I. (63 aa)
	CecIII	Cecropin III. (63 aa)
	DpseGA20392	Peptidoglycan-recognition protein; Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family. (185 aa)
	DpseGA16743	Uncharacterized protein. (109 aa)
	DpseGA19936	GH16 domain-containing protein. (499 aa)
	Tep3	Thioester-containing protein 3. (1468 aa)
	DpseGA11152	Peptidoglycan-recognition protein; Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family. (200 aa)
	Q29BP5	Spatzle-processing enzyme. (788 aa)
	Q29BB5	G protein-coupled receptor kinase. (722 aa)
	Dpse_Tl	Protein toll. (1120 aa)
	Q29AD5	Uncharacterized protein, isoform O. (403 aa)
	Q29AC5	Gram-positive specific serine protease. (410 aa)
	Q29A13	Wingless-type MMTV integration site family, member 8. (391 aa)
	Q298U7	Phosphatidylethanolamine-binding protein. (176 aa)
	Coq2	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. (397 aa)
	Q297J7	Modular serine protease. (629 aa)
	Q295K8	Uncharacterized protein. (181 aa)
	Q294N1	Uncharacterized protein. (383 aa)
	Q291C1	Uncharacterized protein. (68 aa)
	Q291C0	Uncharacterized protein. (236 aa)
	Q290V6	Uncharacterized protein. (125 aa)
	Q290S1	Uncharacterized protein. (690 aa)
	Q28ZI9	ATPase inhibitor, mitochondrial. (106 aa)
	Q28ZH2	Myeloid differentiation primary response protein MyD88. (528 aa)
	Q28YZ4	Uncharacterized protein. (151 aa)
	B5DZR3	Uncharacterized protein. (105 aa)
	B5DYM5	Uncharacterized protein. (232 aa)
	B5DYG5	Uncharacterized protein. (234 aa)
	Dpse_CecII	Cecropin. (87 aa)
	B5DW97	Uncharacterized protein. (547 aa)
	DpseGA23224	Uncharacterized protein. (842 aa)
	DpseGA28220	Guanylate cyclase. (1534 aa)
	DpseGA23050	Peptidase S1 domain-containing protein. (252 aa)
	DpseGA13274	Uncharacterized protein, isoform B. (255 aa)
	DpseGA22837	Uncharacterized protein, isoform B. (212 aa)
	DpseGA21462	Uncharacterized protein. (163 aa)
	DpseGA19867	Uncharacterized protein, isoform E. (1051 aa)
	A0A0R3NLW3	ATPase inhibitor, mitochondrial. (85 aa)
	A0A0R3NJI3	Peptidoglycan-recognition protein LB. (245 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NJI3	Q290V6	A0A0R3NJI3	Q290V6	Peptidoglycan-recognition protein LB.	Uncharacterized protein.	0.427
B5DW97	Q29AD5	B5DW97	Q29AD5	Uncharacterized protein.	Uncharacterized protein, isoform O.	0.413
B5DYG5	CecI	B5DYG5	Q5F4I4	Uncharacterized protein.	Cecropin I.	0.408
B5DYG5	Q290V6	B5DYG5	Q290V6	Uncharacterized protein.	Uncharacterized protein.	0.473
B5DYG5	Q291C1	B5DYG5	Q291C1	Uncharacterized protein.	Uncharacterized protein.	0.414
B5DYM5	CecI	B5DYM5	Q5F4I4	Uncharacterized protein.	Cecropin I.	0.408
B5DYM5	Q290V6	B5DYM5	Q290V6	Uncharacterized protein.	Uncharacterized protein.	0.473
B5DYM5	Q291C1	B5DYM5	Q291C1	Uncharacterized protein.	Uncharacterized protein.	0.414
CecI	B5DYG5	Q5F4I4	B5DYG5	Cecropin I.	Uncharacterized protein.	0.408
CecI	B5DYM5	Q5F4I4	B5DYM5	Cecropin I.	Uncharacterized protein.	0.408
CecI	CecIII	Q5F4I4	Q5F4I1	Cecropin I.	Cecropin III.	0.975
CecI	DpseGA16743	Q5F4I4	Q2LZI5	Cecropin I.	Uncharacterized protein.	0.711
CecI	DpseGA19867	Q5F4I4	A0A0R3NSZ5	Cecropin I.	Uncharacterized protein, isoform E.	0.923
CecI	DpseGA20392	Q5F4I4	Q2M116	Cecropin I.	Peptidoglycan-recognition protein; Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.	0.524
CecI	Dpse_CecII	Q5F4I4	B5DXK3	Cecropin I.	Cecropin.	0.900
CecI	Q290V6	Q5F4I4	Q290V6	Cecropin I.	Uncharacterized protein.	0.716
CecI	Q291C0	Q5F4I4	Q291C0	Cecropin I.	Uncharacterized protein.	0.408
CecI	Q291C1	Q5F4I4	Q291C1	Cecropin I.	Uncharacterized protein.	0.689
CecI	Q295K8	Q5F4I4	Q295K8	Cecropin I.	Uncharacterized protein.	0.498
CecIII	CecI	Q5F4I1	Q5F4I4	Cecropin III.	Cecropin I.	0.975