(64 nodes) Collagen-containing extracellular matrix network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA13629	Uncharacterized protein, isoform A. (3393 aa)
	DpseGA32438	Uncharacterized protein. (702 aa)
	DpseGA10921	Uncharacterized protein, isoform B. (411 aa)
	DpseGA31087	Uncharacterized protein. (518 aa)
	DpseGA31559	Uncharacterized protein. (331 aa)
	DpseGA31138	Uncharacterized protein. (456 aa)
	DpseGA32830	Fibrinogen C-terminal domain-containing protein. (80 aa)
	DpseGA32601	Fibrinogen C-terminal domain-containing protein. (186 aa)
	DpseGA15110	Uncharacterized protein, isoform B. (345 aa)
	DpseGA32841	Uncharacterized protein. (279 aa)
	DpseGA28607	Uncharacterized protein, isoform B. (481 aa)
	DpseGA28200	Uncharacterized protein, isoform C. (165 aa)
	DpseGA11663	Uncharacterized protein, isoform L. (4858 aa)
	DpseGA25394	Fibrinogen C-terminal domain-containing protein. (317 aa)
	DpseGA25261	Fibrinogen C-terminal domain-containing protein. (458 aa)
	DpseGA25399	Fibrinogen C-terminal domain-containing protein. (370 aa)
	DpseGA25254	Fibrinogen C-terminal domain-containing protein. (366 aa)
	DpseGA25435	Fibrinogen C-terminal domain-containing protein. (408 aa)
	DpseGA25460	Uncharacterized protein, isoform A. (1794 aa)
	DpseGA25781	Fibrinogen C-terminal domain-containing protein. (205 aa)
	DpseGA28982	Fibrinogen C-terminal domain-containing protein. (297 aa)
	DpseGA28035	COesterase domain-containing protein. (998 aa)
	DpseGA28097	Fibrinogen C-terminal domain-containing protein. (158 aa)
	DpseGA28100	Fibrinogen C-terminal domain-containing protein. (93 aa)
	DpseGA28101	Fibrinogen C-terminal domain-containing protein. (261 aa)
	DpseGA22617	Uncharacterized protein, isoform A. (122 aa)
	DpseGA29267	Uncharacterized protein. (808 aa)
	DpseGA29271	Uncharacterized protein, isoform B. (353 aa)
	DpseGA23529	Fibrinogen C-terminal domain-containing protein. (428 aa)
	DpseGA23387	Fibrinogen C-terminal domain-containing protein. (325 aa)
	DpseGA23659	Uncharacterized protein. (343 aa)
	DpseGA23302	Uncharacterized protein. (407 aa)
	DpseGA28713	Fibrinogen C-terminal domain-containing protein. (235 aa)
	DpseGA22193	Uncharacterized protein, isoform E. (2914 aa)
	DpseGA29147	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (204 aa)
	B5DVG8	Uncharacterized protein. (2876 aa)
	B5DX48	Uncharacterized protein. (260 aa)
	B5DZG5	Uncharacterized protein. (869 aa)
	B5DZK6	Uncharacterized protein. (281 aa)
	B5E0Q2	Uncharacterized protein, isoform A. (1353 aa)
	Q28WM3	Uncharacterized protein. (293 aa)
	Q28XG9	Uncharacterized protein, isoform A. (1386 aa)
	Q28XL6	Matrix metalloproteinase-14 (membrane-inserted). (610 aa)
	Q28XV4	Uncharacterized protein. (784 aa)
	Q290T3	SPARC-related modular calcium-binding protein. (633 aa)
	Q290X6	Uncharacterized protein, isoform B. (474 aa)
	Q291A2	Uncharacterized protein. (444 aa)
	Q291C3	Uncharacterized protein. (603 aa)
	Q292D6	Uncharacterized protein. (877 aa)
	Q299Y6	Uncharacterized protein, isoform A. (2914 aa)
	Q29BA1	Secreted protein acidic and rich in cysteine. (301 aa)
	DpseGA17375	Uncharacterized protein. (1637 aa)
	DpseGA18565	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (527 aa)
	DpseGA20417	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (559 aa)
	DpseGA16758	Chitin-binding type-2 domain-containing protein. (541 aa)
	DpseGA21682	NUC205 domain-containing protein. (674 aa)
	DpseGA11325	Uncharacterized protein. (1529 aa)
	DpseGA10179	Uncharacterized protein. (3708 aa)
	DpseGA14719	Uncharacterized protein, isoform A. (324 aa)
	DpseGA17987	Collagen IV NC1 domain-containing protein. (1784 aa)
	DpseGA14182	Collagen IV NC1 domain-containing protein. (1904 aa)
	DpseGA20375	Uncharacterized protein. (2887 aa)
	DpseGA19067	Uncharacterized protein, isoform C. (1829 aa)
	DpseGA16712	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (769 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DZK6	DpseGA28982	B5DZK6	B5DJK1	Uncharacterized protein.	Fibrinogen C-terminal domain-containing protein.	0.490
B5DZK6	Q28WM3	B5DZK6	Q28WM3	Uncharacterized protein.	Uncharacterized protein.	0.532
B5E0Q2	DpseGA10179	B5E0Q2	Q29FI3	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.666
B5E0Q2	DpseGA11663	B5E0Q2	A0A0R3P7N6	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform L.	0.775
B5E0Q2	DpseGA13629	B5E0Q2	Q29KB2	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.556
B5E0Q2	DpseGA14182	B5E0Q2	Q29L09	Uncharacterized protein, isoform A.	Collagen IV NC1 domain-containing protein.	0.698
B5E0Q2	DpseGA17375	B5E0Q2	Q29CY8	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.838
B5E0Q2	DpseGA17987	B5E0Q2	Q29L08	Uncharacterized protein, isoform A.	Collagen IV NC1 domain-containing protein.	0.466
B5E0Q2	DpseGA23659	B5E0Q2	B5DQS8	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.556
B5E0Q2	DpseGA32841	B5E0Q2	A0A0R3P320	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.556
B5E0Q2	Q28XG9	B5E0Q2	Q28XG9	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.769
B5E0Q2	Q28XL6	B5E0Q2	Q28XL6	Uncharacterized protein, isoform A.	Matrix metalloproteinase-14 (membrane-inserted).	0.432
B5E0Q2	Q29BA1	B5E0Q2	Q29BA1	Uncharacterized protein, isoform A.	Secreted protein acidic and rich in cysteine.	0.592
DpseGA10179	B5E0Q2	Q29FI3	B5E0Q2	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.666
DpseGA10179	DpseGA14182	Q29FI3	Q29L09	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.636
DpseGA10179	DpseGA17375	Q29FI3	Q29CY8	Uncharacterized protein.	Uncharacterized protein.	0.962
DpseGA10179	DpseGA17987	Q29FI3	Q29L08	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.445
DpseGA10179	DpseGA25460	Q29FI3	B5DHR2	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.669
DpseGA10921	DpseGA32438	A0A0R3NRC4	A0A0R3NQY5	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.978
DpseGA11325	DpseGA14182	Q29FB4	Q29L09	Uncharacterized protein.	Collagen IV NC1 domain-containing protein.	0.555