(4 nodes) Elongin complex network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA27687	Uncharacterized protein, isoform B; Belongs to the SKP1 family. (139 aa)
	DpseGA23998	Uncharacterized protein. (349 aa)
	B5DY77	Uncharacterized protein. (118 aa)
	Q29A62	Uncharacterized protein. (699 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DY77	DpseGA23998	B5DY77	B5DSW6	Uncharacterized protein.	Uncharacterized protein.	0.612
B5DY77	DpseGA27687	B5DY77	A0A0R3P1Q1	Uncharacterized protein.	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	0.999
B5DY77	Q29A62	B5DY77	Q29A62	Uncharacterized protein.	Uncharacterized protein.	0.941
DpseGA23998	B5DY77	B5DSW6	B5DY77	Uncharacterized protein.	Uncharacterized protein.	0.612
DpseGA23998	DpseGA27687	B5DSW6	A0A0R3P1Q1	Uncharacterized protein.	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	0.942
DpseGA27687	B5DY77	A0A0R3P1Q1	B5DY77	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	Uncharacterized protein.	0.999
DpseGA27687	DpseGA23998	A0A0R3P1Q1	B5DSW6	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	Uncharacterized protein.	0.942
DpseGA27687	Q29A62	A0A0R3P1Q1	Q29A62	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	Uncharacterized protein.	0.990
Q29A62	B5DY77	Q29A62	B5DY77	Uncharacterized protein.	Uncharacterized protein.	0.941
Q29A62	DpseGA27687	Q29A62	A0A0R3P1Q1	Uncharacterized protein.	Uncharacterized protein, isoform B; Belongs to the SKP1 family.	0.990