(5 nodes) Protein K48-linked deubiquitination network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA20268	Uncharacterized protein, isoform A. (583 aa)
	DpseGA13118	Ubiquitin carboxyl-terminal hydrolase. (872 aa)
	DpseGA12786	DUF4205 domain-containing protein. (494 aa)
	DpseGA18560	OTU domain-containing protein. (262 aa)
	DpseGA11383	Ubiquitin carboxyl-terminal hydrolase. (829 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA11383	DpseGA13118	Q29E26	Q29JF4	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.498
DpseGA11383	DpseGA18560	Q29E26	Q29CR8	Ubiquitin carboxyl-terminal hydrolase.	OTU domain-containing protein.	0.593
DpseGA13118	DpseGA11383	Q29JF4	Q29E26	Ubiquitin carboxyl-terminal hydrolase.	Ubiquitin carboxyl-terminal hydrolase.	0.498
DpseGA13118	DpseGA18560	Q29JF4	Q29CR8	Ubiquitin carboxyl-terminal hydrolase.	OTU domain-containing protein.	0.590
DpseGA18560	DpseGA11383	Q29CR8	Q29E26	OTU domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.593
DpseGA18560	DpseGA13118	Q29CR8	Q29JF4	OTU domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.590