(9 nodes) Apical complex network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0R3NJD9	Uncharacterized protein, isoform G. (2610 aa)
	A0A0R3NI42	Uncharacterized protein, isoform D. (2255 aa)
	DpseGA10568	Uncharacterized protein, isoform B. (674 aa)
	DpseGA14394	Rhomboid domain-containing protein. (252 aa)
	DpseGA19802	Uncharacterized protein. (117 aa)
	DpseGA18757	Uncharacterized protein. (366 aa)
	rho	Rho; Belongs to the peptidase S54 family. (373 aa)
	DpseGA18624	Uncharacterized protein, isoform C. (1562 aa)
	A0A0R3NP93	annotation not available (982 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NI42	A0A0R3NP93	A0A0R3NI42	A0A0R3NP93	Uncharacterized protein, isoform D.	annotation not available	0.649
A0A0R3NI42	DpseGA18624	A0A0R3NI42	A0A0R3NZI7	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform C.	0.632
A0A0R3NJD9	A0A0R3NP93	A0A0R3NJD9	A0A0R3NP93	Uncharacterized protein, isoform G.	annotation not available	0.646
A0A0R3NP93	A0A0R3NI42	A0A0R3NP93	A0A0R3NI42	annotation not available	Uncharacterized protein, isoform D.	0.649
A0A0R3NP93	A0A0R3NJD9	A0A0R3NP93	A0A0R3NJD9	annotation not available	Uncharacterized protein, isoform G.	0.646
A0A0R3NP93	DpseGA18624	A0A0R3NP93	A0A0R3NZI7	annotation not available	Uncharacterized protein, isoform C.	0.995
DpseGA18624	A0A0R3NI42	A0A0R3NZI7	A0A0R3NI42	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform D.	0.632
DpseGA18624	A0A0R3NP93	A0A0R3NZI7	A0A0R3NP93	Uncharacterized protein, isoform C.	annotation not available	0.995