(10 nodes) Seh1-associated complex network (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q292C4	Uncharacterized protein. (494 aa)
	Q290Y1	Uncharacterized protein. (354 aa)
	DpseGA11387	Uncharacterized protein, isoform E. (1562 aa)
	DpseGA18371	Uncharacterized protein. (986 aa)
	DpseGA21545	Uncharacterized protein. (393 aa)
	DpseGA20081	Uncharacterized protein, isoform A. (871 aa)
	DpseGA21319	Uncharacterized protein. (636 aa)
	Q29BT6	WD repeat-containing protein 24. (813 aa)
	Q29BI5	Protein transport protein SEC13. (356 aa)
	Q296E3	Ras-related GTP-binding protein A/B. (311 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DpseGA11387	DpseGA18371	A0A0R3P2I6	Q29M45	Uncharacterized protein, isoform E.	Uncharacterized protein.	0.999
DpseGA11387	DpseGA20081	A0A0R3P2I6	Q29MJ3	Uncharacterized protein, isoform E.	Uncharacterized protein, isoform A.	0.999
DpseGA11387	DpseGA21319	A0A0R3P2I6	Q29ED8	Uncharacterized protein, isoform E.	Uncharacterized protein.	0.999
DpseGA11387	DpseGA21545	A0A0R3P2I6	Q29FL0	Uncharacterized protein, isoform E.	Uncharacterized protein.	0.999
DpseGA11387	Q290Y1	A0A0R3P2I6	Q290Y1	Uncharacterized protein, isoform E.	Uncharacterized protein.	0.997
DpseGA11387	Q292C4	A0A0R3P2I6	Q292C4	Uncharacterized protein, isoform E.	Uncharacterized protein.	0.414
DpseGA11387	Q296E3	A0A0R3P2I6	Q296E3	Uncharacterized protein, isoform E.	Ras-related GTP-binding protein A/B.	0.997
DpseGA11387	Q29BI5	A0A0R3P2I6	Q29BI5	Uncharacterized protein, isoform E.	Protein transport protein SEC13.	0.998
DpseGA11387	Q29BT6	A0A0R3P2I6	Q29BT6	Uncharacterized protein, isoform E.	WD repeat-containing protein 24.	0.999
DpseGA18371	DpseGA11387	Q29M45	A0A0R3P2I6	Uncharacterized protein.	Uncharacterized protein, isoform E.	0.999
DpseGA18371	DpseGA20081	Q29M45	Q29MJ3	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.999
DpseGA18371	DpseGA21319	Q29M45	Q29ED8	Uncharacterized protein.	Uncharacterized protein.	0.999
DpseGA18371	DpseGA21545	Q29M45	Q29FL0	Uncharacterized protein.	Uncharacterized protein.	0.999
DpseGA18371	Q290Y1	Q29M45	Q290Y1	Uncharacterized protein.	Uncharacterized protein.	0.999
DpseGA18371	Q292C4	Q29M45	Q292C4	Uncharacterized protein.	Uncharacterized protein.	0.586
DpseGA18371	Q296E3	Q29M45	Q296E3	Uncharacterized protein.	Ras-related GTP-binding protein A/B.	0.869
DpseGA18371	Q29BI5	Q29M45	Q29BI5	Uncharacterized protein.	Protein transport protein SEC13.	0.999
DpseGA18371	Q29BT6	Q29M45	Q29BT6	Uncharacterized protein.	WD repeat-containing protein 24.	0.999
DpseGA20081	DpseGA11387	Q29MJ3	A0A0R3P2I6	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform E.	0.999
DpseGA20081	DpseGA18371	Q29MJ3	Q29M45	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.999