49 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Q293R4	Transcription initiation factor TFIIF subunit beta. (282 aa)
	DpseGA12611	Uncharacterized protein, isoform A. (1228 aa)
	DpseGA19898	Uncharacterized protein. (931 aa)
	Q29BZ5	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	Q29AG5	116 kDa U5 small nuclear ribonucleoprotein component. (975 aa)
	Q299B2	DNA-directed RNA polymerase II subunit RPB9. (134 aa)
	Q298X6	DNA-directed RNA polymerase II subunit RPB2. (1176 aa)
	Q298A9	Small nuclear ribonucleoprotein D2. (119 aa)
	Q297S1	Uncharacterized protein. (240 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q295V2	Splicing factor, arginine/serine-rich 1. (263 aa)
	DpseGA27654	Uncharacterized protein. (173 aa)
	DpseGA31575	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
	DpseGA23502	Uncharacterized protein, isoform B. (341 aa)
	DpseGA25844	TOG domain-containing protein. (1340 aa)
	DpseGA25581	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
	DpseGA24995	Uncharacterized protein. (385 aa)
	DpseGA22602	Uncharacterized protein. (210 aa)
	DpseGA22581	Uncharacterized protein. (214 aa)
	DpseGA22988	PID domain-containing protein. (1008 aa)
	B5DW06	Small nuclear ribonucleoprotein G. (76 aa)
	B5DXG4	Transcription initiation factor TFIIF subunit alpha. (576 aa)
	B5DXW9	Transcription initiation factor TFIIF subunit alpha. (558 aa)
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	B5E133	Small nuclear ribonucleoprotein D3. (150 aa)
	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	DpseGA15004	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	Q292C3	Small nuclear ribonucleoprotein F. (88 aa)
	Q293E2	Pre-mRNA-processing factor 8. (2397 aa)
	Cbp20	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...] (154 aa)
	DpseGA12181	RRM domain-containing protein. (121 aa)
	Cbp80	Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp80 does not bind directly capped RNAs [...] (800 aa)
	DpseGA17684	Uncharacterized protein. (341 aa)
	RpII215	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1889 aa)
	DpseGA15173	RRM domain-containing protein. (161 aa)
	DpseGA20659	RPOLD domain-containing protein. (275 aa)
	DpseGA17206	Uncharacterized protein, isoform C. (501 aa)
	DpseGA16568	C3H1-type domain-containing protein. (135 aa)
	DpseGA15896	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	DpseGA17553	Uncharacterized protein, isoform A. (758 aa)
	DpseGA10248	Uncharacterized protein. (848 aa)
	DpseGA19897	RNA_pol_L_2 domain-containing protein. (117 aa)
	DpseGA18884	RRM domain-containing protein. (207 aa)
	DpseGA17451	WD_REPEATS_REGION domain-containing protein. (347 aa)
	DpseGA18820	Small nuclear ribonucleoprotein-associated protein. (199 aa)
	DpseGA19578	Uncharacterized protein. (812 aa)
	DpseGA10862	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	DpseGA19239	Uncharacterized protein. (2142 aa)
	DpseGA10544	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (125 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DW06	B5E0K0	B5DW06	B5E0K0	Small nuclear ribonucleoprotein G.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.662
B5DW06	B5E133	B5DW06	B5E133	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein D3.	0.999
B5DW06	B5E1D3	B5DW06	B5E1D3	Small nuclear ribonucleoprotein G.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.842
B5DW06	Cbp20	B5DW06	Q293V6	Small nuclear ribonucleoprotein G.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	0.996
B5DW06	Cbp80	B5DW06	Q29G82	Small nuclear ribonucleoprotein G.	Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp80 does not bind directly capped RNAs [...]	0.979
B5DW06	DpseGA10248	B5DW06	Q29MP0	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.979
B5DW06	DpseGA10544	B5DW06	Q2M0K6	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
B5DW06	DpseGA10862	B5DW06	Q2M0A5	Small nuclear ribonucleoprotein G.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.768
B5DW06	DpseGA12181	B5DW06	Q29FI5	Small nuclear ribonucleoprotein G.	RRM domain-containing protein.	0.974
B5DW06	DpseGA12611	B5DW06	Q29DX1	Small nuclear ribonucleoprotein G.	Uncharacterized protein, isoform A.	0.986
B5DW06	DpseGA15004	B5DW06	I5AMN4	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
B5DW06	DpseGA15173	B5DW06	Q29IR5	Small nuclear ribonucleoprotein G.	RRM domain-containing protein.	0.565
B5DW06	DpseGA15896	B5DW06	Q29LJ5	Small nuclear ribonucleoprotein G.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.984
B5DW06	DpseGA16568	B5DW06	Q29LG4	Small nuclear ribonucleoprotein G.	C3H1-type domain-containing protein.	0.971
B5DW06	DpseGA17451	B5DW06	Q29N00	Small nuclear ribonucleoprotein G.	WD_REPEATS_REGION domain-containing protein.	0.956
B5DW06	DpseGA17553	B5DW06	Q29LZ8	Small nuclear ribonucleoprotein G.	Uncharacterized protein, isoform A.	0.984
B5DW06	DpseGA17684	B5DW06	Q29GF7	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.965
B5DW06	DpseGA18820	B5DW06	Q29NI7	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein-associated protein.	0.999
B5DW06	DpseGA19239	B5DW06	Q2M0I9	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.994
B5DW06	DpseGA19578	B5DW06	Q2LZX7	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.708