37 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5E1L9	DNA excision repair protein ERCC-2. (769 aa)
	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	DpseGA20571	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (531 aa)
	DpseGA10767	General transcription factor IIH subunit. (445 aa)
	DpseGA20328	Uncharacterized protein; Belongs to the cyclin family. (324 aa)
	DpseGA10862	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	DpseGA20769	Uncharacterized protein. (797 aa)
	DpseGA17896	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1126 aa)
	DpseGA18615	Uncharacterized protein. (298 aa)
	B5DWI8	DNA-directed RNA polymerase I subunit RPA49. (385 aa)
	B5DW52	Transcription initiation factor TFIID TATA-box-binding protein. (642 aa)
	DpseGA25490	Uncharacterized protein. (385 aa)
	DpseGA27232	Uncharacterized protein. (381 aa)
	DpseGA22581	Uncharacterized protein. (214 aa)
	DpseGA22602	Uncharacterized protein. (210 aa)
	DpseGA22626	Uncharacterized protein. (401 aa)
	DpseGA20441	Uncharacterized protein. (220 aa)
	DpseGA17664	RPOLD domain-containing protein. (333 aa)
	DpseGA13701	Uncharacterized protein. (240 aa)
	DpseGA17133	Uncharacterized protein. (609 aa)
	DpseGA12515	Uncharacterized protein. (257 aa)
	DpseGA17354	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (360 aa)
	DpseGA14764	Uncharacterized protein, isoform A. (1059 aa)
	DpseGA15433	Uncharacterized protein, isoform C. (633 aa)
	DpseGA13267	SprT-like domain-containing protein. (1053 aa)
	DpseGA31256	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	DpseGA28879	Uncharacterized protein. (73 aa)
	DpseGA28986	Uncharacterized protein. (322 aa)
	Q29BZ5	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	Q29AR6	DNA-directed RNA polymerase I subunit RPA12. (121 aa)
	Q29AJ6	TATA box-binding protein-associated factor RNA polymerase I subunit B. (869 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q292B8	Transcription initiation factor TFIID TATA-box-binding protein. (345 aa)
	Q291K0	Transcription initiation factor TFIIH subunit 1. (587 aa)
	Q291D4	DNA-directed RNA polymerase I subunit RPA1. (1647 aa)
	Q28XJ6	CDK-activating kinase assembly factor MAT1. (320 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DW52	B5DWI8	B5DW52	B5DWI8	Transcription initiation factor TFIID TATA-box-binding protein.	DNA-directed RNA polymerase I subunit RPA49.	0.410
B5DW52	B5E0K0	B5DW52	B5E0K0	Transcription initiation factor TFIID TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.688
B5DW52	B5E1D3	B5DW52	B5E1D3	Transcription initiation factor TFIID TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.800
B5DW52	B5E1L9	B5DW52	B5E1L9	Transcription initiation factor TFIID TATA-box-binding protein.	DNA excision repair protein ERCC-2.	0.777
B5DW52	DpseGA10767	B5DW52	Q2M0P7	Transcription initiation factor TFIID TATA-box-binding protein.	General transcription factor IIH subunit.	0.759
B5DW52	DpseGA10862	B5DW52	Q2M0A5	Transcription initiation factor TFIID TATA-box-binding protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.809
B5DW52	DpseGA12515	B5DW52	Q29JY4	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.487
B5DW52	DpseGA13267	B5DW52	Q29HG4	Transcription initiation factor TFIID TATA-box-binding protein.	SprT-like domain-containing protein.	0.432
B5DW52	DpseGA15433	B5DW52	Q29HR1	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein, isoform C.	0.432
B5DW52	DpseGA17133	B5DW52	Q29K22	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.596
B5DW52	DpseGA17354	B5DW52	Q29J32	Transcription initiation factor TFIID TATA-box-binding protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.544
B5DW52	DpseGA17664	B5DW52	Q29L21	Transcription initiation factor TFIID TATA-box-binding protein.	RPOLD domain-containing protein.	0.752
B5DW52	DpseGA17896	B5DW52	Q29N37	Transcription initiation factor TFIID TATA-box-binding protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.675
B5DW52	DpseGA18615	B5DW52	Q29LH3	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.713
B5DW52	DpseGA20328	B5DW52	Q2M0B7	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein; Belongs to the cyclin family.	0.670
B5DW52	DpseGA20571	B5DW52	Q2M1D2	Transcription initiation factor TFIID TATA-box-binding protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.794
B5DW52	DpseGA20769	B5DW52	Q2LZJ4	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.813
B5DW52	DpseGA22581	B5DW52	B5DLP1	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.688
B5DW52	DpseGA22602	B5DW52	B5DLL1	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.688
B5DW52	DpseGA22626	B5DW52	B5DLH0	Transcription initiation factor TFIID TATA-box-binding protein.	Uncharacterized protein.	0.713