STRINGSTRING
DpseGA31575 DpseGA31575 DpseGA22177 DpseGA22177 DpseGA17613 DpseGA17613 DpseGA27548 DpseGA27548 DpseGA22988 DpseGA22988 DpseGA23761 DpseGA23761 DpseGA25550 DpseGA25550 B5DW06 B5DW06 B5DXG7 B5DXG7 B5DYG6 B5DYG6 B5E133 B5E133 DpseGA15004 DpseGA15004 DpseGA30013 DpseGA30013 I7LZD2 I7LZD2 DpseGA17582 DpseGA17582 Q28X16 Q28X16 Q28XK5 Q28XK5 Q28YF4 Q28YF4 Q28YL2 Q28YL2 Q28ZB8 Q28ZB8 cbc cbc Pabp2 Pabp2 Q291E2 Q291E2 Q291Z5 Q291Z5 Q292C3 Q292C3 Q292Q8 Q292Q8 Q293K7 Q293K7 Cbp20 Cbp20 Q295E9 Q295E9 Q295J9 Q295J9 Q295V2 Q295V2 Q295X2 Q295X2 Q295X5 Q295X5 Q296R0 Q296R0 Q297L3 Q297L3 Q297M4 Q297M4 Q297R7 Q297R7 Q297T9 Q297T9 Q298G7 Q298G7 Q298H1 Q298H1 Q299J6 Q299J6 Q299N5 Q299N5 Q299N6 Q299N6 Q29AB0 Q29AB0 Q29BF9 Q29BF9 DpseGA19037 DpseGA19037 DpseGA16626 DpseGA16626 DpseGA14344 DpseGA14344 DpseGA20165 DpseGA20165 DpseGA19986 DpseGA19986 Cbp80 Cbp80 DpseGA20292 DpseGA20292 DpseGA17020 DpseGA17020 DpseGA15173 DpseGA15173 DpseGA16382 DpseGA16382 DpseGA18884 DpseGA18884 DpseGA18291 DpseGA18291 DpseGA18820 DpseGA18820 DpseGA20225 DpseGA20225 DpseGA17536 DpseGA17536 DpseGA12798 DpseGA12798 DpseGA19018 DpseGA19018 A0A0R3NHE9 A0A0R3NHE9 A0A0R3NUT8 A0A0R3NUT8
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DpseGA31575Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (71 aa)
DpseGA22177U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (418 aa)
DpseGA17613Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (232 aa)
DpseGA27548Suf domain-containing protein. (755 aa)
DpseGA22988PID domain-containing protein. (1008 aa)
DpseGA23761PWI domain-containing protein. (993 aa)
DpseGA25550Helicase C-terminal domain-containing protein. (415 aa)
B5DW06Small nuclear ribonucleoprotein G. (76 aa)
B5DXG7Pre-mRNA 3'-end-processing factor FIP1. (686 aa)
B5DYG6Cleavage and polyadenylation specificity factor subunit 2. (699 aa)
B5E133Small nuclear ribonucleoprotein D3. (150 aa)
DpseGA15004Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
DpseGA30013Uncharacterized protein, isoform A. (259 aa)
I7LZD2Pre-mRNA-processing factor SLU7. (577 aa)
DpseGA17582Uncharacterized protein. (282 aa)
Q28X16Uncharacterized protein. (147 aa)
Q28XK5Uncharacterized protein. (147 aa)
Q28YF4Uncharacterized protein. (872 aa)
Q28YL2Uncharacterized protein. (262 aa)
Q28ZB8Uncharacterized protein. (165 aa)
cbcProtein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (425 aa)
Pabp2Polyadenylate-binding protein 2; Involved in the 3'-end formation of mRNA precursors (pre- mRNA) by the addition of a poly(A) tail of 200-250 nt to the upstream cleavage product. Stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction and controls also the poly(A) tail length. Increases the affinity of poly(A) polymerase for RNA. Binds to poly(A) and to poly(G) with high affinity. May protect the poly(A) tail from degradation (By similarity). (225 aa)
Q291E2Cleavage and polyadenylation specificity factor subunit 1. (1459 aa)
Q291Z5Splicing factor U2AF 65 kDa subunit. (491 aa)
Q292C3Small nuclear ribonucleoprotein F. (88 aa)
Q292Q8Regulator of nonsense transcripts 3. (514 aa)
Q293K7Uncharacterized protein. (284 aa)
Cbp20Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...] (154 aa)
Q295E9Uncharacterized protein, isoform A. (1316 aa)
Q295J9RNA-binding protein with serine-rich domain 1. (378 aa)
Q295V2Splicing factor, arginine/serine-rich 1. (263 aa)
Q295X2Uncharacterized protein. (1770 aa)
Q295X5SAP domain-containing ribonucleoprotein. (316 aa)
Q296R0Uncharacterized protein. (477 aa)
Q297L3Uncharacterized protein. (1170 aa)
Q297M4Polyadenylation factor subunit 2. (812 aa)
Q297R7Cleavage stimulation factor subunit 1. (424 aa)
Q297T9Pre-mRNA-processing factor 17. (575 aa)
Q298G7ATP-dependent RNA helicase. (399 aa)
Q298H1Uncharacterized protein. (320 aa)
Q299J6Uncharacterized protein. (718 aa)
Q299N5Cleavage stimulation factor subunit 2. (418 aa)
Q299N6Cleavage and polyadenylation specificity factor subunit 3. (684 aa)
Q29AB0Histone RNA hairpin-binding protein. (269 aa)
Q29BF9Uncharacterized protein. (833 aa)
DpseGA19037RRM domain-containing protein. (196 aa)
DpseGA16626Uncharacterized protein. (252 aa)
DpseGA14344Uncharacterized protein. (274 aa)
DpseGA20165Uncharacterized protein, isoform A. (649 aa)
DpseGA19986RRM domain-containing protein. (504 aa)
Cbp80Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp80 does not bind directly capped RNAs [...] (800 aa)
DpseGA20292Uncharacterized protein. (1249 aa)
DpseGA17020Uncharacterized protein. (1218 aa)
DpseGA15173RRM domain-containing protein. (161 aa)
DpseGA16382Uncharacterized protein. (1654 aa)
DpseGA18884RRM domain-containing protein. (207 aa)
DpseGA18291Uncharacterized protein. (515 aa)
DpseGA18820Small nuclear ribonucleoprotein-associated protein. (199 aa)
DpseGA20225Uncharacterized protein. (424 aa)
DpseGA17536Uncharacterized protein. (241 aa)
DpseGA12798Uncharacterized protein, isoform B. (840 aa)
DpseGA19018WD_REPEATS_REGION domain-containing protein. (352 aa)
A0A0R3NHE9Splicing factor, arginine/serine-rich 4/5/6. (362 aa)
A0A0R3NUT8Pre-mRNA cleavage complex 2 protein Pcf11. (2003 aa)
Your Current Organism:
Drosophila pseudoobscura
NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura
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