38 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA22531	B-block_TFIIIC domain-containing protein. (1922 aa)
	A0A0R3NJ88	Uncharacterized protein, isoform A. (740 aa)
	A0A0R3NMP9	General transcription factor 3C polypeptide 6. (158 aa)
	A0A0R3NTF2	DNA-directed RNA polymerase III subunit RPC11. (108 aa)
	DpseGA23383	Uncharacterized protein, isoform B. (2377 aa)
	DpseGA28895	Uncharacterized protein, isoform C. (268 aa)
	DpseGA28986	Uncharacterized protein. (322 aa)
	DpseGA22602	Uncharacterized protein. (210 aa)
	DpseGA22581	Uncharacterized protein. (214 aa)
	DpseGA23837	Uncharacterized protein. (213 aa)
	DpseGA23584	TFIIIC_sub6 domain-containing protein. (150 aa)
	DpseGA22253	RNA_pol_Rpb1_5 domain-containing protein. (342 aa)
	DpseGA24006	Uncharacterized protein. (300 aa)
	B5DW52	Transcription initiation factor TFIID TATA-box-binding protein. (642 aa)
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	Q28ZV6	DNA-directed RNA polymerase III subunit RPC2. (1137 aa)
	Q290S4	General transcription factor 3C polypeptide 3 (transcription factor C subunit 4). (870 aa)
	Q292B8	Transcription initiation factor TFIID TATA-box-binding protein. (345 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q298N3	DNA-directed RNA polymerase III subunit RPC6. (293 aa)
	Q29A77	Transcription factor IIIB 90 kDa subunit. (665 aa)
	Q29B17	DNA-directed RNA polymerase III subunit RPC3. (522 aa)
	Q29BZ5	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	DpseGA14391	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (699 aa)
	DpseGA10397	Uncharacterized protein. (475 aa)
	DpseGA18494	RPOL4c domain-containing protein. (166 aa)
	DpseGA14764	Uncharacterized protein, isoform A. (1059 aa)
	DpseGA21909	Uncharacterized protein. (385 aa)
	DpseGA13701	Uncharacterized protein. (240 aa)
	DpseGA17664	RPOLD domain-containing protein. (333 aa)
	DpseGA20441	Uncharacterized protein. (220 aa)
	DpseGA25404	SANT domain-containing protein. (684 aa)
	DpseGA20100	B-block_TFIIIC domain-containing protein. (1922 aa)
	DpseGA18690	Uncharacterized protein, isoform A. (424 aa)
	DpseGA20275	Uncharacterized protein. (240 aa)
	DpseGA10862	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	DpseGA10413	Uncharacterized protein. (476 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NJ88	A0A0R3NTF2	A0A0R3NJ88	A0A0R3NTF2	Uncharacterized protein, isoform A.	DNA-directed RNA polymerase III subunit RPC11.	0.969
A0A0R3NJ88	B5DW52	A0A0R3NJ88	B5DW52	Uncharacterized protein, isoform A.	Transcription initiation factor TFIID TATA-box-binding protein.	0.507
A0A0R3NJ88	B5E0K0	A0A0R3NJ88	B5E0K0	Uncharacterized protein, isoform A.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.855
A0A0R3NJ88	B5E1D3	A0A0R3NJ88	B5E1D3	Uncharacterized protein, isoform A.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.957
A0A0R3NJ88	DpseGA10397	A0A0R3NJ88	Q29CK7	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.687
A0A0R3NJ88	DpseGA10862	A0A0R3NJ88	Q2M0A5	Uncharacterized protein, isoform A.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.951
A0A0R3NJ88	DpseGA13701	A0A0R3NJ88	Q29KX5	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.507
A0A0R3NJ88	DpseGA14391	A0A0R3NJ88	Q29CI9	Uncharacterized protein, isoform A.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.870
A0A0R3NJ88	DpseGA14764	A0A0R3NJ88	Q29I65	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.507
A0A0R3NJ88	DpseGA17664	A0A0R3NJ88	Q29L21	Uncharacterized protein, isoform A.	RPOLD domain-containing protein.	0.972
A0A0R3NJ88	DpseGA18494	A0A0R3NJ88	Q29FL2	Uncharacterized protein, isoform A.	RPOL4c domain-containing protein.	0.965
A0A0R3NJ88	DpseGA18690	A0A0R3NJ88	Q2LZ05	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform A.	0.976
A0A0R3NJ88	DpseGA20100	A0A0R3NJ88	Q29P95	Uncharacterized protein, isoform A.	B-block_TFIIIC domain-containing protein.	0.453
A0A0R3NJ88	DpseGA20275	A0A0R3NJ88	Q2LZ71	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.967
A0A0R3NJ88	DpseGA20441	A0A0R3NJ88	Q29L40	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.507
A0A0R3NJ88	DpseGA22253	A0A0R3NJ88	B5DTL9	Uncharacterized protein, isoform A.	RNA_pol_Rpb1_5 domain-containing protein.	0.870
A0A0R3NJ88	DpseGA22531	A0A0R3NJ88	B5DV77	Uncharacterized protein, isoform A.	B-block_TFIIIC domain-containing protein.	0.453
A0A0R3NJ88	DpseGA22581	A0A0R3NJ88	B5DLP1	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.855
A0A0R3NJ88	DpseGA22602	A0A0R3NJ88	B5DLL1	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.855
A0A0R3NJ88	DpseGA23837	A0A0R3NJ88	B5DQ42	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.907