33 items (Drosophila pseudoobscura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DpseGA14791	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (655 aa)
	RpII215	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1889 aa)
	DpseGA28879	Uncharacterized protein. (73 aa)
	DpseGA22581	Uncharacterized protein. (214 aa)
	B5DXW9	Transcription initiation factor TFIIF subunit alpha. (558 aa)
	B5DXG4	Transcription initiation factor TFIIF subunit alpha. (576 aa)
	DpseGA22602	Uncharacterized protein. (210 aa)
	DpseGA22626	Uncharacterized protein. (401 aa)
	DpseGA17354	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (360 aa)
	DpseGA20571	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (531 aa)
	DpseGA10767	General transcription factor IIH subunit. (445 aa)
	DpseGA20328	Uncharacterized protein; Belongs to the cyclin family. (324 aa)
	DpseGA10862	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	DpseGA20769	Uncharacterized protein. (797 aa)
	DpseGA17612	mRNA cap guanine-N7 methyltransferase. (408 aa)
	DpseGA19897	RNA_pol_L_2 domain-containing protein. (117 aa)
	DpseGA15399	R3H domain-containing protein. (267 aa)
	DpseGA18615	Uncharacterized protein. (298 aa)
	DpseGA20659	RPOLD domain-containing protein. (275 aa)
	B5E0K0	DNA-directed RNA polymerases I, II, and III subunit RPABC1. (210 aa)
	B5E1D3	DNA-directed RNA polymerases I, II, and III subunit RPABC4. (57 aa)
	B5E1L9	DNA excision repair protein ERCC-2. (769 aa)
	Q28XC9	Atypical dual specificity phosphatase. (385 aa)
	Q28XJ6	CDK-activating kinase assembly factor MAT1. (320 aa)
	Q291K0	Transcription initiation factor TFIIH subunit 1. (587 aa)
	Q292S1	Transcription elongation factor SPT5. (1080 aa)
	Q293R4	Transcription initiation factor TFIIF subunit beta. (282 aa)
	Q294C6	Uncharacterized protein. (386 aa)
	DpseGA27654	Uncharacterized protein. (173 aa)
	Q296B8	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (131 aa)
	Q298X6	DNA-directed RNA polymerase II subunit RPB2. (1176 aa)
	Q299B2	DNA-directed RNA polymerase II subunit RPB9. (134 aa)
	Q29BZ5	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5DXG4	B5DXW9	B5DXG4	B5DXW9	Transcription initiation factor TFIIF subunit alpha.	Transcription initiation factor TFIIF subunit alpha.	0.904
B5DXG4	B5E0K0	B5DXG4	B5E0K0	Transcription initiation factor TFIIF subunit alpha.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.827
B5DXG4	B5E1D3	B5DXG4	B5E1D3	Transcription initiation factor TFIIF subunit alpha.	DNA-directed RNA polymerases I, II, and III subunit RPABC4.	0.924
B5DXG4	B5E1L9	B5DXG4	B5E1L9	Transcription initiation factor TFIIF subunit alpha.	DNA excision repair protein ERCC-2.	0.927
B5DXG4	DpseGA10767	B5DXG4	Q2M0P7	Transcription initiation factor TFIIF subunit alpha.	General transcription factor IIH subunit.	0.933
B5DXG4	DpseGA10862	B5DXG4	Q2M0A5	Transcription initiation factor TFIIF subunit alpha.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.916
B5DXG4	DpseGA14791	B5DXG4	Q29H78	Transcription initiation factor TFIIF subunit alpha.	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus.	0.504
B5DXG4	DpseGA17354	B5DXG4	Q29J32	Transcription initiation factor TFIIF subunit alpha.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.660
B5DXG4	DpseGA17612	B5DXG4	Q29P67	Transcription initiation factor TFIIF subunit alpha.	mRNA cap guanine-N7 methyltransferase.	0.625
B5DXG4	DpseGA18615	B5DXG4	Q29LH3	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.841
B5DXG4	DpseGA19897	B5DXG4	Q29MR4	Transcription initiation factor TFIIF subunit alpha.	RNA_pol_L_2 domain-containing protein.	0.930
B5DXG4	DpseGA20328	B5DXG4	Q2M0B7	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein; Belongs to the cyclin family.	0.833
B5DXG4	DpseGA20571	B5DXG4	Q2M1D2	Transcription initiation factor TFIIF subunit alpha.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.945
B5DXG4	DpseGA20659	B5DXG4	Q29K78	Transcription initiation factor TFIIF subunit alpha.	RPOLD domain-containing protein.	0.936
B5DXG4	DpseGA20769	B5DXG4	Q2LZJ4	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.938
B5DXG4	DpseGA22581	B5DXG4	B5DLP1	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.827
B5DXG4	DpseGA22602	B5DXG4	B5DLL1	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.827
B5DXG4	DpseGA22626	B5DXG4	B5DLH0	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.841
B5DXG4	DpseGA27654	B5DXG4	Q294T7	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.904
B5DXG4	DpseGA28879	B5DXG4	B5DJI9	Transcription initiation factor TFIIF subunit alpha.	Uncharacterized protein.	0.729