STRINGSTRING
ychF ychF SCB72389.1 SCB72389.1 SCB72362.1 SCB72362.1 SCB72259.1 SCB72259.1 nnrE nnrE SCB72026.1 SCB72026.1 SCB74980.1 SCB74980.1 gyrB gyrB recF recF rpmH rpmH SCB74449.1 SCB74449.1 SCB74083.1 SCB74083.1 SCB73474.1 SCB73474.1 SCB73160.1 SCB73160.1 cshA cshA parE parE SCB93691.1 SCB93691.1 SCB93873.1 SCB93873.1 SCB93999.1 SCB93999.1 SCB94283.1 SCB94283.1 SCB95556.1 SCB95556.1 fhs fhs SCB96077.1 SCB96077.1 ackA ackA priA priA rpmB rpmB smc smc rpsP rpsP SCB97861.1 SCB97861.1 rpmI rpmI rplT rplT raiA raiA rpsL rpsL rpsG rpsG purD purD purF purF SCC00739.1 SCC00739.1 SCC02168.1 SCC02168.1 SCC02250.1 SCC02250.1 SCC02983.1 SCC02983.1 SCC03002.1 SCC03002.1 SCC03170.1 SCC03170.1 lysA lysA sbcD sbcD hbsU hbsU rpsA rpsA SCC04181.1 SCC04181.1 rpsN rpsN dtd dtd SCC04627.1 SCC04627.1 rpmG1 rpmG1 rpsB rpsB SCC05581.1 SCC05581.1 SCC06050.1 SCC06050.1 SCC06177.1 SCC06177.1 rpsU rpsU rplS rplS ybeY ybeY SCC06375.1 SCC06375.1 recO recO SCC07911.1 SCC07911.1 rnmV rnmV fabF fabF SCC09058.1 SCC09058.1 rpmE2 rpmE2 SCC09420.1 SCC09420.1 SCC08480.1 SCC08480.1 rnz rnz SCC11275.1 SCC11275.1 rpsT rpsT rpsO rpsO trxA trxA ruvX ruvX cshB cshB SCC12834.1 SCC12834.1 SCC13749.1 SCC13749.1 rpmF2 rpmF2 SCC14204.1 SCC14204.1 SCC14007.1 SCC14007.1 add add SCC14705.1 SCC14705.1 SCC14736.1 SCC14736.1 SCC14793.1 SCC14793.1 SCC15291.1 SCC15291.1 SCC15761.1 SCC15761.1 dnaB dnaB ispE ispE SCB91223.1 SCB91223.1 SCB90477.1 SCB90477.1 rpsD rpsD ezrA ezrA SCB91907.1 SCB91907.1 SCB91964.1 SCB91964.1 mgtE mgtE SCB92741.1 SCB92741.1 ribF ribF cutC cutC ylqF ylqF topA topA SCB90527.1 SCB90527.1 nadD nadD yqeH yqeH SCB89025.1 SCB89025.1 SCB88544.1 SCB88544.1 SCB88462.1 SCB88462.1 SCB88301.1 SCB88301.1 rpmA rpmA rplU rplU SCB87978.1 SCB87978.1 recQ recQ SCB89924.1 SCB89924.1 recN recN SCB89771.1 SCB89771.1 SCB86456.1 SCB86456.1 SCB86222.1 SCB86222.1 rfbB rfbB SCB85861.1 SCB85861.1 SCB85805.1 SCB85805.1 SCB85785.1 SCB85785.1 SCB85763.1 SCB85763.1 SCB85227.1 SCB85227.1 tyrS tyrS rpsR rpsR rpsF rpsF SCB82777.1 SCB82777.1 fni fni dnaI dnaI SCB82443.1 SCB82443.1 SCB82339.1 SCB82339.1 udk udk dnaG dnaG SCB81796.1 SCB81796.1 SCB81780.1 SCB81780.1 SCB83142.1 SCB83142.1 rplQ rplQ rpsK rpsK rpsM rpsM rpmJ rpmJ adk adk rplO rplO rpmD rpmD rpsE rpsE rplR rplR rplF rplF rpsH rpsH rplE rplE rplX rplX rplN rplN rpsQ rpsQ rpmC rpmC rplP rplP rpsC rpsC rplV rplV rpsS rpsS rplB rplB rplW rplW rplD rplD rplC rplC rpsJ rpsJ recR recR SCB76849.1 SCB76849.1 tadA tadA SCB75876.1 SCB75876.1 SCB76264.1 SCB76264.1 SCB79663.1 SCB79663.1 SCB79078.1 SCB79078.1 rpsI rpsI rplM rplM truA truA rplL rplL rplJ rplJ rplA rplA rplK rplK rpmG rpmG mrnC mrnC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ychFHypothetical protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa)
SCB72389.1Hypothetical protein. (136 aa)
SCB72362.1Acetyl esterase/lipase. (297 aa)
SCB72259.1tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (353 aa)
nnrEyjeF N-terminal region; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family. (221 aa)
SCB72026.1NADPH:quinone reductase. (305 aa)
SCB74980.1Plasma-membrane calcium-translocating P-type ATPase. (813 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (648 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (379 aa)
rpmHLSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
SCB74449.1Helix-turn-helix. (178 aa)
SCB74083.1Restriction system protein. (336 aa)
SCB73474.1Fructoselysine 6-kinase. (271 aa)
SCB73160.1ElaA protein. (124 aa)
cshAATP-dependent RNA helicase DeaD; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. (516 aa)
parETopoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily. (675 aa)
SCB93691.1Pyruvate dehydrogenase E1 component beta subunit. (326 aa)
SCB93873.1PTS system, sucrose-specific IIC component. (638 aa)
SCB93999.1PTS system, beta-glucosides-specific IIC component. (504 aa)
SCB94283.1Lactate oxidase. (364 aa)
SCB95556.1DNA repair protein RadC. (144 aa)
fhsFormate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family. (553 aa)
SCB96077.1RNA-binding protein YlmH, contains S4-like domain. (261 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (395 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (806 aa)
rpmBLarge subunit ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (66 aa)
smcCondensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1184 aa)
rpsPSmall subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (90 aa)
SCB97861.1DNA topoisomerase-3. (692 aa)
rpmILarge subunit ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa)
rplTLarge subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (182 aa)
raiARibosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (186 aa)
rpsLSmall subunit ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (139 aa)
rpsGSmall subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
purDPhosphoribosylamine--glycine ligase; Belongs to the GARS family. (410 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. (486 aa)
SCC00739.1Glycerol dehydrogenase. (363 aa)
SCC02168.1HlyD family secretion protein. (336 aa)
SCC02250.1DNA repair exonuclease SbcCD nuclease subunit. (397 aa)
SCC02983.1Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family. (225 aa)
SCC03002.1Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family. (226 aa)
SCC03170.1N-acetyldiaminopimelate deacetylase; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate. (383 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (428 aa)
sbcDExodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (390 aa)
hbsUDNA-binding protein HU-beta; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (91 aa)
rpsASmall subunit ribosomal protein S1. (405 aa)
SCC04181.1ATP-dependent DNA helicase RecQ. (480 aa)
rpsNSmall subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (148 aa)
SCC04627.1Uncharacterized protein, UPF0160 family. (276 aa)
rpmG1Large subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)
rpsBSmall subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (258 aa)
SCC05581.1Deoxyadenosine/deoxycytidine kinase. (211 aa)
SCC06050.1Cupin domain protein. (137 aa)
SCC06177.1hydroxymethylglutaryl-CoA synthase. (388 aa)
rpsUSmall subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (61 aa)
rplSLarge subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (117 aa)
ybeYProbable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (160 aa)
SCC06375.1Diacylglycerol kinase (ATP). (141 aa)
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (263 aa)
SCC07911.1dCMP deaminase. (157 aa)
rnmVRibonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (187 aa)
fabF3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (411 aa)
SCC09058.1Ribonuclease HI. (129 aa)
rpmE2Large subunit ribosomal protein L31. (80 aa)
SCC09420.1Helix-turn-helix domain-containing protein. (128 aa)
SCC08480.1Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. (445 aa)
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (326 aa)
SCC11275.1L-ribulose-5-phosphate 4-epimerase. (231 aa)
rpsTSmall subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. (84 aa)
rpsOSmall subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
trxAThioredoxin; Belongs to the thioredoxin family. (104 aa)
ruvXPutative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (144 aa)
cshBATP-dependent RNA helicase CshB; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. (452 aa)
SCC12834.1Phosphoesterase RecJ domain-containing protein. (316 aa)
SCC13749.1Hypothetical protein. (92 aa)
rpmF2Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (57 aa)
SCC14204.1VIT family protein. (161 aa)
SCC14007.1Restriction endonuclease. (127 aa)
addAdenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (336 aa)
SCC14705.1NAD-dependent deacetylase. (233 aa)
SCC14736.13-hydroxy-3-methylglutaryl-coenzyme A reductase; Belongs to the HMG-CoA reductase family. (420 aa)
SCC14793.1Predicted N-acyltransferase, GNAT family. (152 aa)
SCC15291.1Putative phosphoesterase. (275 aa)
SCC15761.1Acetyltransferase (GNAT) domain-containing protein. (146 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (471 aa)
ispE4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (290 aa)
SCB91223.1SseB protein N-terminal domain-containing protein. (273 aa)
SCB90477.1Phosphoribosyl 1,2-cyclic phosphodiesterase. (266 aa)
rpsDSmall subunit ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (203 aa)
ezrASeptation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. (577 aa)
SCB91907.1Plasma-membrane calcium-translocating P-type ATPase. (858 aa)
SCB91964.1Cobalt-zinc-cadmium efflux system protein. (298 aa)
mgtEMagnesium transporter; Acts as a magnesium transporter. (459 aa)
SCB92741.1Ribosomal protein L7Ae. (101 aa)
ribFRiboflavin kinase / FMN adenylyltransferase; Belongs to the ribF family. (312 aa)
cutCCopper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (211 aa)
ylqFRibosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (291 aa)
topADNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (716 aa)
SCB90527.1Hypothetical protein. (454 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (212 aa)
yqeHHypothetical protein. (380 aa)
SCB89025.1Putative ATPase. (428 aa)
SCB88544.1Isochorismate synthase. (392 aa)
SCB88462.1Hypothetical protein. (578 aa)
SCB88301.1Helicase conserved C-terminal domain-containing protein. (624 aa)
rpmALarge subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (103 aa)
rplULarge subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (100 aa)
SCB87978.1Rhomboid protease GluP. (223 aa)
recQATP-dependent DNA helicase RecQ. (606 aa)
SCB89924.1General stress protein 13. (132 aa)
recNDNA repair protein RecN (Recombination protein N); May be involved in recombinational repair of damaged DNA. (563 aa)
SCB89771.1Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family. (286 aa)
SCB86456.15' nucleotidase, deoxy (Pyrimidine), type C protein (NT5C). (189 aa)
SCB86222.1PTS system, sucrose-specific IIC component. (655 aa)
rfbBdTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (338 aa)
SCB85861.13-hydroxybutyryl-CoA dehydrogenase. (294 aa)
SCB85805.1Hypothetical protein. (72 aa)
SCB85785.1Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family. (361 aa)
SCB85763.1Glycosyl hydrolases family 2, sugar binding domain. (167 aa)
SCB85227.1Thiol-disulfide isomerase or thioredoxin. (111 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (419 aa)
rpsRSmall subunit ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (80 aa)
rpsFSmall subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (99 aa)
SCB82777.1DNA replication protein. (246 aa)
fniIsopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (346 aa)
dnaIPrimosomal protein DnaI. (326 aa)
SCB82443.1Replicative DNA helicase loader DnaB. (450 aa)
SCB82339.1NADPH:quinone reductase. (311 aa)
udkUridine kinase. (200 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (621 aa)
SCB81796.1DNA topoisomerase. (186 aa)
SCB81780.1DNA topoisomerase-3. (541 aa)
SCB83142.1ADP-ribosylglycohydrolase. (298 aa)
rplQLarge subunit ribosomal protein L17. (128 aa)
rpsKSSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa)
rpsMSmall subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (121 aa)
rpmJLarge subunit ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (39 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (189 aa)
rplOLarge subunit ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa)
rpmDLarge subunit ribosomal protein L30. (61 aa)
rpsESmall subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (167 aa)
rplRLarge subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (118 aa)
rplFLarge subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
rpsHSmall subunit ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa)
rplELarge subunit ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa)
rplXLarge subunit ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (102 aa)
rplNLSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQSmall subunit ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa)
rpmCLarge subunit ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (68 aa)
rplPLarge subunit ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (139 aa)
rpsCSmall subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (222 aa)
rplVLarge subunit ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (115 aa)
rpsSSmall subunit ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa)
rplBLarge subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa)
rplWLarge subunit ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (95 aa)
rplDLarge subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel. (207 aa)
rplCLarge subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (208 aa)
rpsJSmall subunit ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
recRDNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (199 aa)
SCB76849.1Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (102 aa)
tadAtRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (176 aa)
SCB75876.1UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. (450 aa)
SCB76264.1Deoxyadenosine/deoxycytidine kinase. (217 aa)
SCB79663.1methylated-DNA-[protein]-cysteine S-methyltransferase. (167 aa)
SCB79078.1Succinyl-diaminopimelate desuccinylase. (383 aa)
rpsISmall subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa)
rplMLarge subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (147 aa)
truAtRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (249 aa)
rplLLarge subunit ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa)
rplJLarge subunit ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (167 aa)
rplALarge subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa)
rplKLarge subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa)
rpmGLarge subunit ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)
mrnCRibonuclease-3 family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (141 aa)
Your Current Organism:
Weissella hellenica
NCBI taxonomy Id: 46256
Other names: ATCC 51523, CCUG 33494, DSM 7378, IFO 15553, JCM 10103, LMG 15125, LMG:15125, NBRC 15553, NCFB 2973, NCIMB 702973, W. hellenica, strain LV346
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