(15 nodes) Mostly uncharacterized, incl. RNA repair, and PIN domain network (Bordetella genomosp. 13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARP94559.1	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (79 aa)
	ARP96164.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	ARP96167.1	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	ARP96168.1	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	ARP96175.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	ARP97536.1	Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	ARP96176.1	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
	ARP96178.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	ARP96179.1	PIN domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)
	ARP96180.1	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	ARP96181.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	ARP96182.1	HORMA domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	ARP96183.1	DNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ARP96184.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	ARP96185.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)

Your Current Organism:

Bordetella genomosp. 13

NCBI taxonomy Id: 463040
Other names: B. genomosp. 13, Bordetella genogroup 13, Bordetella sp. AU7206

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARP94559.1	ARP96185.1	CAL15_09260	CAL15_18510	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
ARP96164.1	ARP96167.1	CAL15_18400	CAL15_18415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
ARP96164.1	ARP96168.1	CAL15_18400	CAL15_18420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ARP96167.1	ARP96164.1	CAL15_18415	CAL15_18400	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
ARP96167.1	ARP96168.1	CAL15_18415	CAL15_18420	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ARP96168.1	ARP96164.1	CAL15_18420	CAL15_18400	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ARP96168.1	ARP96167.1	CAL15_18420	CAL15_18415	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ARP96168.1	ARP96175.1	CAL15_18420	CAL15_18455	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
ARP96168.1	ARP96176.1	CAL15_18420	CAL15_18465	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
ARP96168.1	ARP97536.1	CAL15_18420	CAL15_18460	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ARP96175.1	ARP96168.1	CAL15_18455	CAL15_18420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
ARP96175.1	ARP96176.1	CAL15_18455	CAL15_18465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ARP96175.1	ARP96178.1	CAL15_18455	CAL15_18475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ARP96175.1	ARP96179.1	CAL15_18455	CAL15_18480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PIN domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
ARP96175.1	ARP96180.1	CAL15_18455	CAL15_18485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARP96175.1	ARP96181.1	CAL15_18455	CAL15_18490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARP96175.1	ARP96182.1	CAL15_18455	CAL15_18495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HORMA domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARP96175.1	ARP96183.1	CAL15_18455	CAL15_18500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ARP96175.1	ARP97536.1	CAL15_18455	CAL15_18460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ARP96176.1	ARP96168.1	CAL15_18465	CAL15_18420	Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RadC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419