(68 nodes) CheY-like superfamily network (Rhizobium oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMF03238.1	Cell cycle transcriptional regulator CtrA. (233 aa)
	SMF04749.1	Two-component sensor histidine kinase, contains HisKA and HATPase domains. (342 aa)
	SMF04756.1	Response regulator receiver domain-containing protein. (147 aa)
	SMF05339.1	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (521 aa)
	SMF05818.1	Two-component system, cell cycle response regulator CpdR. (120 aa)
	SMF07565.1	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family. (264 aa)
	SMF07621.1	Hypothetical protein. (118 aa)
	SMF08212.1	PAS domain S-box-containing protein. (646 aa)
	SMF08768.1	Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD. (457 aa)
	SMF09765.1	Response regulator receiver and ANTAR domain protein. (209 aa)
	SMF11002.1	Two-component system, OmpR family, response regulator. (244 aa)
	SMF12839.1	Two-component system, OmpR family, phosphate regulon response regulator PhoB. (235 aa)
	SMF13052.1	Two-component system, OmpR family, response regulator CpxR. (228 aa)
	SMF18606.1	Two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD. (448 aa)
	SMF20382.1	Hypothetical protein. (1030 aa)
	SMF21627.1	PAS domain S-box-containing protein. (640 aa)
	SMF21648.1	Two-component system, OmpR family, phosphate regulon response regulator OmpR. (241 aa)
	SME99705.1	Regulatory protein, luxR family. (306 aa)
	SME98330.1	Response regulator receiver domain-containing protein. (150 aa)
	SME97991.1	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (227 aa)
	SME95980.1	Response regulator receiver domain-containing protein. (119 aa)
	SMF21957.1	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (223 aa)
	SMF52724.1	Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1460 aa)
	ntrC	Two-component system, NtrC family, nitrogen regulation response regulator GlnG; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (483 aa)
	SMF67415.1	Two-component system, NtrC family, nitrogen regulation response regulator NtrX. (454 aa)
	SMF68510.1	Two-component system, cell cycle sensor histidine kinase and response regulator CckA. (869 aa)
	SMF70309.1	Response regulator receiver domain-containing protein. (282 aa)
	SMF70367.1	Response regulator receiver domain-containing protein. (120 aa)
	SMF71865.1	PAS domain S-box-containing protein. (974 aa)
	SMF73907.1	Two-component system, OmpR family, phosphate regulon response regulator OmpR. (232 aa)
	SMF74893.1	CheY chemotaxis protein or a CheY-like REC (receiver) domain. (124 aa)
	SMF75268.1	PAS domain S-box-containing protein. (1244 aa)
	SMF02992.1	Signal transduction histidine kinase. (1127 aa)
	SMF02994.1	Regulatory protein, luxR family. (311 aa)
	SMF03331.1	Two-component system, chemotaxis family, response regulator CheY. (120 aa)
	SME99711.1	Signal transduction histidine kinase. (1125 aa)
	SMF58328.1	PAS domain S-box-containing protein. (684 aa)
	SMF58333.1	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains. (463 aa)
	SMF58348.1	Two-component system, OmpR family, response regulator. (253 aa)
	SMF58377.1	Two-component system, OmpR family, response regulator. (239 aa)
	SMF59271.1	Two-component system, OmpR family, phosphate regulon response regulator PhoB. (237 aa)
	SMF34467.1	Two-component system, OmpR family, response regulator ChvI. (246 aa)
	SMF34613.1	Two-component system, response regulator RegA. (203 aa)
	SMF35556.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (223 aa)
	SMF35559.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (226 aa)
	cheB	Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (360 aa)
	SMF36702.1	Two-component system, chemotaxis family, response regulator CheY. (122 aa)
	SMF37432.1	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (225 aa)
	SMF38849.1	CheY chemotaxis protein or a CheY-like REC (receiver) domain. (131 aa)
	SMF39141.1	Pilus assembly protein CpaE. (431 aa)
	SMF39352.1	CheY chemotaxis protein or a CheY-like REC (receiver) domain. (128 aa)
	SMF40718.1	Signal transduction histidine kinase. (593 aa)
	SMF42422.1	Two-component system, OmpR family, phosphate regulon response regulator PhoB. (227 aa)
	SMF42516.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (215 aa)
	SMF42834.1	Na+/proline symporter. (1171 aa)
	SMF42992.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (223 aa)
	SMF43180.1	Two-component system, chemotaxis family, response regulator CheY. (121 aa)
	cheB-2	Two-component system, chemotaxis family, response regulator CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (346 aa)
	SMF43224.1	Two-component system, chemotaxis family, response regulator CheY. (129 aa)
	SMF43610.1	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (223 aa)
	SMF44298.1	Two-component system, OmpR family, KDP operon response regulator KdpE. (230 aa)
	SMF44983.1	PAS domain S-box-containing protein. (556 aa)
	SMF49195.1	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (223 aa)
	SMF49248.1	Two-component system, OmpR family, response regulator. (252 aa)
	SMF51142.1	Two-component system, cell cycle response regulator DivK. (123 aa)
	SMF51144.1	Two-component system, cell cycle response regulator. (456 aa)
	SMF52620.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (255 aa)
	SMF52719.1	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (245 aa)

Your Current Organism:

Rhizobium oryzae

NCBI taxonomy Id: 464029
Other names: Allorhizobium oryzae, Allorhizobium oryzae (Peng et al. 2008) Mousavi et al. 2016, CGMCC 1.7048, HAMBI 3197, LMG 24253, LMG:24253, R. oryzae, Rhizobium oryzae Peng et al. 2008, strain Alt 505

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SME95980.1	SME97991.1	SAMN02982989_0268	SAMN02982989_0426	Response regulator receiver domain-containing protein.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.668
SME95980.1	SME99711.1	SAMN02982989_0268	SAMN02982989_0607	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.508
SME95980.1	SMF02992.1	SAMN02982989_0268	SAMN02982989_4588	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.639
SME95980.1	SMF02994.1	SAMN02982989_0268	SAMN02982989_4589	Response regulator receiver domain-containing protein.	Regulatory protein, luxR family.	0.483
SME95980.1	SMF03238.1	SAMN02982989_0268	SAMN02982989_4603	Response regulator receiver domain-containing protein.	Cell cycle transcriptional regulator CtrA.	0.750
SME95980.1	SMF03331.1	SAMN02982989_0268	SAMN02982989_4608	Response regulator receiver domain-containing protein.	Two-component system, chemotaxis family, response regulator CheY.	0.448
SME95980.1	SMF05339.1	SAMN02982989_0268	SAMN02982989_4758	Response regulator receiver domain-containing protein.	DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.	0.514
SME95980.1	SMF05818.1	SAMN02982989_0268	SAMN02982989_4789	Response regulator receiver domain-containing protein.	Two-component system, cell cycle response regulator CpdR.	0.707
SME95980.1	SMF08212.1	SAMN02982989_0268	SAMN02982989_4984	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.834
SME95980.1	SMF11002.1	SAMN02982989_0268	SAMN02982989_5226	Response regulator receiver domain-containing protein.	Two-component system, OmpR family, response regulator.	0.720
SME95980.1	SMF12839.1	SAMN02982989_0268	SAMN02982989_5374	Response regulator receiver domain-containing protein.	Two-component system, OmpR family, phosphate regulon response regulator PhoB.	0.564
SME95980.1	SMF13052.1	SAMN02982989_0268	SAMN02982989_5391	Response regulator receiver domain-containing protein.	Two-component system, OmpR family, response regulator CpxR.	0.762
SME95980.1	SMF20382.1	SAMN02982989_0268	SAMN02982989_5763	Response regulator receiver domain-containing protein.	Hypothetical protein.	0.829
SME95980.1	SMF21648.1	SAMN02982989_0268	SAMN02982989_5875	Response regulator receiver domain-containing protein.	Two-component system, OmpR family, phosphate regulon response regulator OmpR.	0.711
SME95980.1	SMF21957.1	SAMN02982989_0268	SAMN02982989_5900	Response regulator receiver domain-containing protein.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.714
SME95980.1	SMF34467.1	SAMN02982989_0268	SAMN02982989_1304	Response regulator receiver domain-containing protein.	Two-component system, OmpR family, response regulator ChvI.	0.732
SME95980.1	SMF34613.1	SAMN02982989_0268	SAMN02982989_1325	Response regulator receiver domain-containing protein.	Two-component system, response regulator RegA.	0.474
SME95980.1	SMF37432.1	SAMN02982989_0268	SAMN02982989_1560	Response regulator receiver domain-containing protein.	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.	0.754
SME95980.1	SMF40718.1	SAMN02982989_0268	SAMN02982989_1854	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.858
SME95980.1	SMF42834.1	SAMN02982989_0268	SAMN02982989_2056	Response regulator receiver domain-containing protein.	Na+/proline symporter.	0.839

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