(15 nodes) Extracellular polysaccharide biosynthetic process network (Pseudomonas agarici)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMB85021.1	PbsX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (939 aa)
	AMB85433.1	Tyrosine protein kinase; Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology. (742 aa)
	AMB88268.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AMB85446.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)
	AMB86587.1	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (291 aa)
	AMB86588.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
	AMB86752.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (183 aa)
	AMB86589.1	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (294 aa)
	AMB84992.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
	AWM79_06705	ABC transporter substrate-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	AMB85016.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AMB85017.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	AMB85018.1	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)
	AMB85019.1	Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	AMB85020.1	Biofilm formation protein PelB; Derived by automated computational analysis using gene prediction method: Protein Homology. (1196 aa)

Your Current Organism:

Pseudomonas agarici

NCBI taxonomy Id: 46677
Other names: ATCC 25941, CCUG 32769, CFBP 2063, CIP 106703, DSM 11810, ICMP 2656, JCM 12566, LMG 2112, LMG:2112, NCPPB 2289, P. agarici

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMB84992.1	AMB85433.1	AWM79_06575	AWM79_08990	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine protein kinase; Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AMB84992.1	AMB86587.1	AWM79_06575	AWM79_15260	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.492
AMB84992.1	AMB86588.1	AWM79_06575	AWM79_15265	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.425
AMB84992.1	AMB86752.1	AWM79_06575	AWM79_16185	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.425
AMB85016.1	AMB85017.1	AWM79_06710	AWM79_06715	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AMB85016.1	AMB85018.1	AWM79_06710	AWM79_06720	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AMB85016.1	AMB85019.1	AWM79_06710	AWM79_06725	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AMB85016.1	AMB85020.1	AWM79_06710	AWM79_06730	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biofilm formation protein PelB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AMB85016.1	AMB85021.1	AWM79_06710	AWM79_06735	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	PbsX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AMB85016.1	AMB85433.1	AWM79_06710	AWM79_08990	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine protein kinase; Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide); Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AMB85016.1	AMB86587.1	AWM79_06710	AWM79_15260	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.492
AMB85016.1	AWM79_06705	AWM79_06710	AWM79_06705	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AMB85017.1	AMB85016.1	AWM79_06715	AWM79_06710	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AMB85017.1	AMB85018.1	AWM79_06715	AWM79_06720	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AMB85017.1	AMB85019.1	AWM79_06715	AWM79_06725	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein activator LpoB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AMB85017.1	AMB85020.1	AWM79_06715	AWM79_06730	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biofilm formation protein PelB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
AMB85017.1	AMB85021.1	AWM79_06715	AWM79_06735	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	PbsX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AMB85017.1	AWM79_06705	AWM79_06715	AWM79_06705	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
AMB85018.1	AMB85016.1	AWM79_06720	AWM79_06710	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
AMB85018.1	AMB85017.1	AWM79_06720	AWM79_06715	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967