(53 nodes) Amino acid ABC transporter, permease protein, 3-TM domain, and Bacterial periplasmic substrate-binding proteins network (Pseudomonas nitroreducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CEG18_15235	Unannotated protein. (259 aa)
	CEG18_15240	Unannotated protein. (255 aa)
	CEG18_15245	Unannotated protein. (268 aa)
	CEG18_18395	Unannotated protein. (258 aa)
	CEG18_18445	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (342 aa)
	CEG18_18450	Unannotated protein. (394 aa)
	CEG18_18455	Unannotated protein. (365 aa)
	glnQ	Unannotated protein. (258 aa)
	CEG18_25965	Unannotated protein; Belongs to the proline racemase family. (343 aa)
	glnQ-2	Unannotated protein. (240 aa)
	CEG18_25955	Unannotated protein. (216 aa)
	CEG18_25950	Unannotated protein. (221 aa)
	CEG18_25945	Unannotated protein. (572 aa)
	CEG18_25940	Unannotated protein. (268 aa)
	CEG18_08440	Unannotated protein. (252 aa)
	CEG18_08445	Unannotated protein. (218 aa)
	glnQ-3	Unannotated protein. (247 aa)
	CEG18_08455	Unannotated protein. (428 aa)
	CEG18_16370	Unannotated protein. (268 aa)
	CEG18_16365	Unannotated protein. (237 aa)
	CEG18_16360	Unannotated protein. (230 aa)
	GCA_000807755_01871	Unannotated protein. (261 aa)
	GCA_000807755_01872	Unannotated protein. (224 aa)
	GCA_000807755_01873	Unannotated protein. (244 aa)
	CEG18_25655	Unannotated protein. (444 aa)
	CEG18_25650	Unannotated protein. (651 aa)
	ggt	Unannotated protein. (557 aa)
	CEG18_25640	Unannotated protein. (244 aa)
	CEG18_25635	Unannotated protein. (221 aa)
	CEG18_25630	Unannotated protein. (248 aa)
	CEG18_25625	Unannotated protein. (302 aa)
	CEG18_24730	Unannotated protein. (689 aa)
	CEG18_24735	Unannotated protein. (261 aa)
	CEG18_24740	Unannotated protein. (236 aa)
	CEG18_24745	Unannotated protein. (249 aa)
	CEG18_04345	Unannotated protein. (255 aa)
	CEG18_04350	Unannotated protein. (224 aa)
	CEG18_04355	Unannotated protein. (266 aa)
	CEG18_14065	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (259 aa)
	CEG18_14070	Unannotated protein. (229 aa)
	CEG18_14075	Unannotated protein. (232 aa)
	CEG18_14085	Unannotated protein. (254 aa)
	CEG18_01905	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (265 aa)
	CEG18_01910	Unannotated protein. (320 aa)
	CEG18_01915	Unannotated protein. (244 aa)
	ehuA	Unannotated protein. (285 aa)
	ehuD	Unannotated protein. (218 aa)
	ehuC	Unannotated protein. (218 aa)
	ehuB	Unannotated protein. (284 aa)
	CEG18_20585	Unannotated protein. (257 aa)
	CEG18_20580	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family. (250 aa)
	CEG18_20575	Unannotated protein. (231 aa)
	CEG18_20570	Unannotated protein. (230 aa)

Your Current Organism:

Pseudomonas nitroreducens

NCBI taxonomy Id: 46680
Other names: ATCC 33634, CCUG 12538, CIP 106747, DSM 14399, IFO 12694, JCM 2782, NBRC 12694, P. nitroreducens, Pseudomonas azelaica, strain P-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEG18_01905	CEG18_01910	GCA_000807755_04668	GCA_000807755_04669	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.996
CEG18_01905	CEG18_01915	GCA_000807755_04668	GCA_000807755_04670	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.993
CEG18_01905	CEG18_04345	GCA_000807755_04668	GCA_000807755_04104	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.836
CEG18_01905	CEG18_04350	GCA_000807755_04668	GCA_000807755_04105	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.962
CEG18_01905	CEG18_08445	GCA_000807755_04668	GCA_000807755_01504	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.932
CEG18_01905	CEG18_14070	GCA_000807755_04668	GCA_000807755_04389	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.843
CEG18_01905	CEG18_14075	GCA_000807755_04668	GCA_000807755_04390	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.887
CEG18_01905	CEG18_14085	GCA_000807755_04668	GCA_000807755_04392	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.725
CEG18_01905	CEG18_15235	GCA_000807755_04668	GCA_000807755_00586	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.847
CEG18_01905	CEG18_15240	GCA_000807755_04668	GCA_000807755_00587	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.931
CEG18_01905	CEG18_16360	GCA_000807755_04668	GCA_000807755_01859	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.887
CEG18_01905	CEG18_16365	GCA_000807755_04668	GCA_000807755_01858	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.906
CEG18_01905	CEG18_18450	GCA_000807755_04668	GCA_000807755_01097	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.620
CEG18_01905	CEG18_18455	GCA_000807755_04668	GCA_000807755_01098	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.741
CEG18_01905	CEG18_20570	GCA_000807755_04668	GCA_000807755_06787	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.889
CEG18_01905	CEG18_20575	GCA_000807755_04668	GCA_000807755_06786	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.874
CEG18_01905	CEG18_20585	GCA_000807755_04668	GCA_000807755_06784	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.754
CEG18_01905	CEG18_24730	GCA_000807755_04668	GCA_000807755_02573	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.438
CEG18_01905	CEG18_24740	GCA_000807755_04668	GCA_000807755_02575	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.848
CEG18_01905	CEG18_24745	GCA_000807755_04668	GCA_000807755_02576	Unannotated protein; Belongs to the bacterial solute-binding protein 3 family.	Unannotated protein.	0.892

page 1 of 94

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About