(5 nodes) Oligopeptide/dipeptide ABC transporter, C-terminal, and Nickel cation transmembrane transporter activity network (Lachnoanaerobaculum saburreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KXB53833.1	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00. (550 aa)
	KXB53699.1	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88. (350 aa)
	KXB53700.1	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99. (337 aa)
	KXB53701.1	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00. (348 aa)
	KXB53702.1	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00. (333 aa)

Your Current Organism:

Lachnoanaerobaculum saburreum

NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB53699.1	KXB53700.1	HMPREF1866_02496	HMPREF1866_02497	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	0.974
KXB53699.1	KXB53701.1	HMPREF1866_02496	HMPREF1866_02498	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
KXB53699.1	KXB53702.1	HMPREF1866_02496	HMPREF1866_02499	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	0.982
KXB53699.1	KXB53833.1	HMPREF1866_02496	HMPREF1866_02493	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	0.952
KXB53700.1	KXB53699.1	HMPREF1866_02497	HMPREF1866_02496	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	0.974
KXB53700.1	KXB53701.1	HMPREF1866_02497	HMPREF1866_02498	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	0.998
KXB53700.1	KXB53702.1	HMPREF1866_02497	HMPREF1866_02499	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	0.981
KXB53700.1	KXB53833.1	HMPREF1866_02497	HMPREF1866_02493	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	0.913
KXB53701.1	KXB53699.1	HMPREF1866_02498	HMPREF1866_02496	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	0.998
KXB53701.1	KXB53700.1	HMPREF1866_02498	HMPREF1866_02497	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	0.998
KXB53701.1	KXB53702.1	HMPREF1866_02498	HMPREF1866_02499	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	0.988
KXB53701.1	KXB53833.1	HMPREF1866_02498	HMPREF1866_02493	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	0.933
KXB53702.1	KXB53699.1	HMPREF1866_02499	HMPREF1866_02496	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	0.982
KXB53702.1	KXB53700.1	HMPREF1866_02499	HMPREF1866_02497	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	0.981
KXB53702.1	KXB53701.1	HMPREF1866_02499	HMPREF1866_02498	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	0.988
KXB53702.1	KXB53833.1	HMPREF1866_02499	HMPREF1866_02493	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	0.944
KXB53833.1	KXB53699.1	HMPREF1866_02493	HMPREF1866_02496	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_1450 5.6e-103 peptide ABC transporter ATPase K10823; Psort location: CytoplasmicMembrane, score: 7.88.	0.952
KXB53833.1	KXB53700.1	HMPREF1866_02493	HMPREF1866_02497	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	Oligopeptide ABC transporter, ATP-binding protein OppD; KEGG: gth:Geoth_2280 1.6e-98 oligopeptide/dipeptide ABC transporter ATPase K02031; Psort location: CytoplasmicMembrane, score: 9.99.	0.913
KXB53833.1	KXB53701.1	HMPREF1866_02493	HMPREF1866_02498	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	0.933
KXB53833.1	KXB53702.1	HMPREF1866_02493	HMPREF1866_02499	ABC transporter, substrate-binding protein, family 5; KEGG: esi:Exig_2057 1.8e-74 4-phytase; Psort location: Periplasmic, score: 10.00.	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	0.944

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About