(44 nodes) Binding-protein-dependent transport system inner membrane component network (Lachnoanaerobaculum saburreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KXB61159.1	KEGG: apb:SAR116_1198 1.2e-31 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00. (318 aa)
	KXB61179.1	Putative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: dba:Dbac_1847 2.3e-51 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00. (255 aa)
	KXB61180.1	Putative spermidine/putrescine ABC transporter, permease protein PotB; KEGG: ebe:B21_01131 2.0e-59 potB; potB, subunit of putrescine/spermidine ABC transporter K11071; Psort location: CytoplasmicMembrane, score: 10.00. (291 aa)
	KXB60818.1	Hypothetical protein; KEGG: apb:SAR116_0043 5.5e-18 binding-protein-dependent transport system inner membrane protein K02026; Psort location: CytoplasmicMembrane, score: 10.00. (125 aa)
	KXB60846.1	Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (222 aa)
	KXB60863.1	ABC transporter, permease protein; KEGG: rcm:A1E_00665 2.8e-30 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 10.00. (216 aa)
	KXB60573.1	ABC transporter, permease protein; KEGG: cnc:CNE_2c17850 1.8e-14 potA; spermidine/putrescine ABC transporter ATP-binding protein K02053:K02054; Psort location: CytoplasmicMembrane, score: 10.00. (607 aa)
	KXB60471.1	ABC transporter, permease protein; KEGG: apb:SAR116_1511 6.0e-28 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00. (202 aa)
	KXB60472.1	ABC transporter, permease protein; KEGG: pmo:Pmob_0956 3.7e-44 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00. (274 aa)
	KXB61158.1	ABC transporter, permease protein; KEGG: ttr:Tter_2023 2.1e-48 sugar ABC transporter ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (294 aa)
	KXB60378.1	KEGG: pfe:PSF113_0026 2.0e-45 D-Methionine ABC transporter permease protein K02072; Psort location: CytoplasmicMembrane, score: 10.00. (215 aa)
	KXB59775.1	ABC transporter, permease protein; KEGG: ppy:PPE_00791 2.7e-25 L-arabinose transporter permease araP K10189; Psort location: CytoplasmicMembrane, score: 10.00. (302 aa)
	KXB59776.1	ABC transporter, permease protein; KEGG: cyp:PCC8801_2231 5.4e-27 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (294 aa)
	KXB59529.1	ABC transporter, permease protein; KEGG: sis:LS215_1162 4.4e-32 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00. (273 aa)
	KXB59530.1	ABC transporter, permease protein; KEGG: trq:TRQ2_0338 2.8e-40 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (278 aa)
	KXB59131.1	ABC transporter, permease protein; KEGG: rcm:A1E_00665 8.9e-34 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 10.00. (230 aa)
	KXB58058.1	ABC transporter, permease protein; KEGG: smt:Smal_2681 2.4e-40 monosaccharide-transporting ATPase K10190; Psort location: CytoplasmicMembrane, score: 10.00. (268 aa)
	KXB58059.1	ABC transporter, permease protein; KEGG: bst:GYO_3124 2.7e-41 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00. (309 aa)
	KXB57776.1	Putative oligopeptide ABC transporter, permease protein AppB; KEGG: bmd:BMD_1703 8.7e-59 nikB; nickel import ABC transporter permease subunit NikB K15585; Psort location: CytoplasmicMembrane, score: 10.00. (318 aa)
	KXB57777.1	Putative dipeptide ABC transporter, permease protein DppC; KEGG: bmi:BMEA_B0781 2.4e-56 nikC; nickel transporter permease NikC K15586; Psort location: CytoplasmicMembrane, score: 10.00. (265 aa)
	KXB57787.1	KEGG: hpa:HPAG1_1109 4.5e-46 glutamine ABC transporter, permease protein K02029; Psort location: CytoplasmicMembrane, score: 10.00. (223 aa)
	KXB57788.1	ABC transporter, permease protein; KEGG: cco:CCC13826_0661 2.8e-62 6,7-dimethyl-8-ribityllumazine synthase K02029; Psort location: CytoplasmicMembrane, score: 10.00. (221 aa)
	KXB57798.1	KEGG: pfe:PSF113_0026 1.2e-45 D-Methionine ABC transporter permease protein K02072; Psort location: CytoplasmicMembrane, score: 10.00. (226 aa)
	KXB57392.1	KEGG: apb:SAR116_1967 1.0e-32 ABC transporter permease K15599; Psort location: CytoplasmicMembrane, score: 10.00. (249 aa)
	KXB57427.1	KEGG: apb:SAR116_1198 2.5e-36 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00. (289 aa)
	KXB57428.1	ABC transporter, permease protein; KEGG: hor:Hore_20500 2.9e-35 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (275 aa)
	KXB57162.1	ABC transporter, permease protein; KEGG: tex:Teth514_2199 1.7e-39 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (279 aa)
	KXB57163.1	KEGG: apb:SAR116_1198 2.4e-24 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00. (299 aa)
	KXB56970.1	ABC transporter, permease protein; KEGG: ttr:Tter_2023 4.5e-39 sugar ABC transporter ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (282 aa)
	KXB56971.1	KEGG: apb:SAR116_1198 3.2e-36 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00. (296 aa)
	KXB56883.1	KEGG: llk:LLKF_1844 1.0e-62 malG; maltose ABC transporter permease K10110; Psort location: CytoplasmicMembrane, score: 10.00. (289 aa)
	KXB56884.1	ABC transporter, permease protein; KEGG: cpy:Cphy_2346 2.7e-126 fructose-bisphosphate aldolase K10109; Psort location: CytoplasmicMembrane, score: 10.00. (459 aa)
	KXB56314.1	Putative glutathione ABC transporter, permease protein GsiC; KEGG: amt:Amet_2908 8.8e-66 nickel-transporting ATPase K02033; Psort location: CytoplasmicMembrane, score: 10.00. (315 aa)
	KXB56315.1	Putative oligopeptide ABC transporter, permease protein OppC; KEGG: bmi:BMEA_B0781 4.5e-55 nikC; nickel transporter permease NikC K15586; Psort location: CytoplasmicMembrane, score: 10.00. (299 aa)
	KXB56154.1	ABC transporter, permease protein; KEGG: dmr:Deima_0792 3.5e-14 polyamine-transporting ATPase K02049; Psort location: CytoplasmicMembrane, score: 10.00. (250 aa)
	KXB54805.1	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 5.7e-39 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00. (299 aa)
	KXB54806.1	ABC transporter, permease protein; KEGG: tex:Teth514_2199 9.1e-48 monosaccharide-transporting ATPase K02026; Psort location: CytoplasmicMembrane, score: 10.00. (281 aa)
	KXB53701.1	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00. (348 aa)
	KXB53702.1	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00. (333 aa)
	KXB53716.1	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00. (286 aa)
	KXB53717.1	ABC transporter, permease protein; KEGG: apb:SAR116_1511 3.3e-27 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00. (351 aa)
	KXB52936.1	ABC transporter, permease protein; KEGG: ebe:B21_00867 1.4e-42 potH; potH, subunit of putrescine ABC transporter K11075; Psort location: CytoplasmicMembrane, score: 10.00. (273 aa)
	KXB52937.1	ABC transporter, permease protein; KEGG: cpy:Cphy_0895 4.0e-93 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00. (263 aa)
	KXB52638.1	ABC transporter, permease protein; KEGG: cnc:CNE_2c19150 3.4e-41 fbpC; Fe(3+) ions import ATP-binding protein FbpC K02011; Psort location: CytoplasmicMembrane, score: 10.00. (551 aa)

Your Current Organism:

Lachnoanaerobaculum saburreum

NCBI taxonomy Id: 467210
Other names: ATCC 33271, CCUG 28089, CIP 105341, Catenabacterium saburreum, DSM 3986, Eubacterium saburreum, JCM 11021, L. saburreum, Leptotrichia aerogenes, VPI 11763

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXB52936.1	KXB52937.1	HMPREF1866_02854	HMPREF1866_02855	ABC transporter, permease protein; KEGG: ebe:B21_00867 1.4e-42 potH; potH, subunit of putrescine ABC transporter K11075; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: cpy:Cphy_0895 4.0e-93 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	0.999
KXB52936.1	KXB61179.1	HMPREF1866_02854	HMPREF1866_00120	ABC transporter, permease protein; KEGG: ebe:B21_00867 1.4e-42 potH; potH, subunit of putrescine ABC transporter K11075; Psort location: CytoplasmicMembrane, score: 10.00.	Putative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: dba:Dbac_1847 2.3e-51 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	0.994
KXB52937.1	KXB52936.1	HMPREF1866_02855	HMPREF1866_02854	ABC transporter, permease protein; KEGG: cpy:Cphy_0895 4.0e-93 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: ebe:B21_00867 1.4e-42 potH; potH, subunit of putrescine ABC transporter K11075; Psort location: CytoplasmicMembrane, score: 10.00.	0.999
KXB52937.1	KXB61179.1	HMPREF1866_02855	HMPREF1866_00120	ABC transporter, permease protein; KEGG: cpy:Cphy_0895 4.0e-93 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	Putative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: dba:Dbac_1847 2.3e-51 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	0.899
KXB52937.1	KXB61180.1	HMPREF1866_02855	HMPREF1866_00121	ABC transporter, permease protein; KEGG: cpy:Cphy_0895 4.0e-93 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.	Putative spermidine/putrescine ABC transporter, permease protein PotB; KEGG: ebe:B21_01131 2.0e-59 potB; potB, subunit of putrescine/spermidine ABC transporter K11071; Psort location: CytoplasmicMembrane, score: 10.00.	0.992
KXB53701.1	KXB53702.1	HMPREF1866_02498	HMPREF1866_02499	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	0.988
KXB53701.1	KXB56314.1	HMPREF1866_02498	HMPREF1866_01913	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	Putative glutathione ABC transporter, permease protein GsiC; KEGG: amt:Amet_2908 8.8e-66 nickel-transporting ATPase K02033; Psort location: CytoplasmicMembrane, score: 10.00.	0.909
KXB53701.1	KXB57776.1	HMPREF1866_02498	HMPREF1866_01284	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	Putative oligopeptide ABC transporter, permease protein AppB; KEGG: bmd:BMD_1703 8.7e-59 nikB; nickel import ABC transporter permease subunit NikB K15585; Psort location: CytoplasmicMembrane, score: 10.00.	0.958
KXB53702.1	KXB53701.1	HMPREF1866_02499	HMPREF1866_02498	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: bra:BRADO1095 5.7e-39 oppC; peptide ABC transporter membrane protein K02034; Psort location: CytoplasmicMembrane, score: 10.00.	0.988
KXB53702.1	KXB56315.1	HMPREF1866_02499	HMPREF1866_01914	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	Putative oligopeptide ABC transporter, permease protein OppC; KEGG: bmi:BMEA_B0781 4.5e-55 nikC; nickel transporter permease NikC K15586; Psort location: CytoplasmicMembrane, score: 10.00.	0.944
KXB53702.1	KXB57777.1	HMPREF1866_02499	HMPREF1866_01285	Putative oligopeptide transport system permease protein OppB; KEGG: csc:Csac_1028 2.2e-92 Nickel-transporting ATPase K15581; Psort location: CytoplasmicMembrane, score: 10.00.	Putative dipeptide ABC transporter, permease protein DppC; KEGG: bmi:BMEA_B0781 2.4e-56 nikC; nickel transporter permease NikC K15586; Psort location: CytoplasmicMembrane, score: 10.00.	0.982
KXB53716.1	KXB53717.1	HMPREF1866_02513	HMPREF1866_02514	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: apb:SAR116_1511 3.3e-27 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.978
KXB53716.1	KXB54805.1	HMPREF1866_02513	HMPREF1866_02296	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	Putative transmembrane permease MsmF; KEGG: apb:SAR116_1511 5.7e-39 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.903
KXB53716.1	KXB56884.1	HMPREF1866_02513	HMPREF1866_01794	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: cpy:Cphy_2346 2.7e-126 fructose-bisphosphate aldolase K10109; Psort location: CytoplasmicMembrane, score: 10.00.	0.609
KXB53716.1	KXB56971.1	HMPREF1866_02513	HMPREF1866_01646	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: apb:SAR116_1198 3.2e-36 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.891
KXB53716.1	KXB57163.1	HMPREF1866_02513	HMPREF1866_01558	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: apb:SAR116_1198 2.4e-24 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.891
KXB53716.1	KXB57427.1	HMPREF1866_02513	HMPREF1866_01515	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: apb:SAR116_1198 2.5e-36 sugar ABC transporter permease K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.908
KXB53716.1	KXB58059.1	HMPREF1866_02513	HMPREF1866_01235	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: bst:GYO_3124 2.7e-41 L-arabinose transport system permease AraP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	0.900
KXB53716.1	KXB59529.1	HMPREF1866_02513	HMPREF1866_00890	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: sis:LS215_1162 4.4e-32 binding-protein-dependent transport system inner membrane protein K02025; Psort location: CytoplasmicMembrane, score: 10.00.	0.883
KXB53716.1	KXB59775.1	HMPREF1866_02513	HMPREF1866_00855	ABC transporter, permease protein; KEGG: ppy:PPE_00792 2.1e-34 L-arabinose transporter permease araQ K10190; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, permease protein; KEGG: ppy:PPE_00791 2.7e-25 L-arabinose transporter permease araP K10189; Psort location: CytoplasmicMembrane, score: 10.00.	0.846

page 1 of 16

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About