(5 nodes) ABC-2 family transporter protein, and ABC transporter-like, conserved site network (Streptococcus gordonii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SGO_0302	Membrane protein, putative. (231 aa)
	SGO_0303	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005. (302 aa)
	SGO_0304	Membrane protein, putative. (230 aa)
	SGO_0305	Membrane protein, putative. (252 aa)
	SGO_0306	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005. (302 aa)

Your Current Organism:

Streptococcus gordonii

NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
SGO_0302	SGO_0303	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.763
SGO_0302	SGO_0304	Membrane protein, putative.	Membrane protein, putative.	0.474
SGO_0302	SGO_0305	Membrane protein, putative.	Membrane protein, putative.	0.411
SGO_0302	SGO_0306	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.410
SGO_0303	SGO_0302	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.763
SGO_0303	SGO_0304	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.483
SGO_0303	SGO_0305	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.781
SGO_0303	SGO_0306	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.414
SGO_0304	SGO_0302	Membrane protein, putative.	Membrane protein, putative.	0.474
SGO_0304	SGO_0303	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.483
SGO_0304	SGO_0305	Membrane protein, putative.	Membrane protein, putative.	0.655
SGO_0304	SGO_0306	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.625
SGO_0305	SGO_0302	Membrane protein, putative.	Membrane protein, putative.	0.411
SGO_0305	SGO_0303	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.781
SGO_0305	SGO_0304	Membrane protein, putative.	Membrane protein, putative.	0.655
SGO_0305	SGO_0306	Membrane protein, putative.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.908
SGO_0306	SGO_0302	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.410
SGO_0306	SGO_0303	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	0.414
SGO_0306	SGO_0304	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.625
SGO_0306	SGO_0305	ABC transporter ATP-binding protein-like protein; Identified by match to protein family HMM PF00005.	Membrane protein, putative.	0.908

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