STRINGSTRING
pXO1 pXO1 SGO_0060 SGO_0060 SGO_0061 SGO_0061 SGO_0062 SGO_0062 SGO_0063 SGO_0063 SGO_0064 SGO_0064 SGO_0065 SGO_0065 SGO_0066 SGO_0066 SGO_0067 SGO_0067 SGO_0068 SGO_0068 SGO_0069 SGO_0069 SGO_0070 SGO_0070
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pXO1Conserved hypothetical protein; Identified by match to protein family HMM PF06013; Belongs to the WXG100 family. (95 aa)
SGO_0060Membrane protein, putative. (1004 aa)
SGO_0061Conserved hypothetical protein. (151 aa)
SGO_0062Conserved hypothetical protein. (82 aa)
SGO_0063Conserved hypothetical protein. (417 aa)
SGO_0064Identified by match to protein family HMM PF01580. (1472 aa)
SGO_0065Hypothetical protein; Identified by Glimmer2; putative. (365 aa)
SGO_0066D-3-phosphoglycerate dehydrogenase, putative. (101 aa)
SGO_0067Protein with prophage function domain. (474 aa)
SGO_0068Lipoprotein, putative. (177 aa)
SGO_0069Hypothetical protein; Identified by Glimmer2; putative. (184 aa)
SGO_0070Merozoite surface protein 1. (134 aa)
Your Current Organism:
Streptococcus gordonii
NCBI taxonomy Id: 467705
Other names: S. gordonii str. Challis substr. CH1, Streptococcus gordonii ATCC 35105, Streptococcus gordonii str. Challis substr. CH1, Streptococcus gordonii str. Challis substr. DL1, Streptococcus gordonii str. Challis substr. V288
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