38 items (Trachymyrmex cornetzi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC57_16424	Nucleolar complex protein 2 like protein. (802 aa)
	ALC57_12786	Ribosome biogenesis protein NSA2 like protein. (259 aa)
	ALC57_12288	Surfeit locus protein 6 like protein. (792 aa)
	ALC57_12273	Putative ribosomal RNA methyltransferase NOP2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (714 aa)
	ALC57_12044	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (341 aa)
	ALC57_09312	Suppressor of SWI4 1 like protein. (365 aa)
	ALC57_07621	Putative ribosome production factor 1. (346 aa)
	ALC57_06518	ATP-dependent RNA helicase DDX24. (738 aa)
	ALC57_06172	Ribosome production factor 2 like protein. (314 aa)
	ALC57_02948	Protein SDA1 like protein. (1036 aa)
	ALC57_02480	Putative ATP-dependent RNA helicase DDX56. (519 aa)
	ALC57_00689	Uncharacterized protein. (344 aa)
	ALC57_00289	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (323 aa)
	ALC57_17182	Large subunit GTPase 1 like protein. (595 aa)
	ALC57_17315	PUM-HD domain-containing protein. (653 aa)
	ALC57_17375	Putative rRNA-processing protein EBP2 like protein. (317 aa)
	ALC57_16180	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (428 aa)
	ALC57_15984	WD repeat-containing protein 74. (334 aa)
	ALC57_16038	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	ALC57_15349	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (605 aa)
	ALC57_14755	CCAAT/enhancer-binding protein zeta. (850 aa)
	ALC57_14354	Uncharacterized protein. (149 aa)
	ALC57_12942	Ribosome biogenesis protein BRX1 like protein. (344 aa)
	ALC57_11492	MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein. (229 aa)
	ALC57_10981	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (835 aa)
	ALC57_10062	RNA helicase. (561 aa)
	ALC57_09973	Putative ATP-dependent RNA helicase pitchoune; Belongs to the DEAD box helicase family. (465 aa)
	ALC57_09821	RNA-binding protein 34. (647 aa)
	ALC57_08643	Ribosomal RNA processing protein 1 like protein. (666 aa)
	ALC57_07973	RNA helicase. (550 aa)
	ALC57_07725	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (693 aa)
	ALC57_07734	Protein MAK16 like protein A. (325 aa)
	ALC57_04732	Putative ribosome biogenesis protein RLP24. (173 aa)
	ALC57_04286	Guanine nucleotide-binding protein-like 3 like protein. (569 aa)
	ALC57_03436	RRP15-like protein. (261 aa)
	ALC57_03493	Nucleolar complex protein 3 like protein. (736 aa)
	ALC57_03675	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (811 aa)
	ALC57_01902	Putative nucleolar GTP-binding protein 1. (558 aa)

Your Current Organism:

Trachymyrmex cornetzi

NCBI taxonomy Id: 471704
Other names: T. cornetzi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC57_00289	ALC57_00689	A0A151JSQ6	A0A151JQY6	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.996
ALC57_00289	ALC57_01902	A0A151JSQ6	A0A195EL85	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative nucleolar GTP-binding protein 1.	0.999
ALC57_00289	ALC57_02480	A0A151JSQ6	A0A151JP08	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative ATP-dependent RNA helicase DDX56.	0.937
ALC57_00289	ALC57_02948	A0A151JSQ6	A0A151JMU3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Protein SDA1 like protein.	0.993
ALC57_00289	ALC57_03436	A0A151JSQ6	A0A195EFS3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RRP15-like protein.	0.917
ALC57_00289	ALC57_03493	A0A151JSQ6	A0A195EFV2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nucleolar complex protein 3 like protein.	0.988
ALC57_00289	ALC57_03675	A0A151JSQ6	A0A195EGR1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.998
ALC57_00289	ALC57_04286	A0A151JSQ6	A0A195EF32	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Guanine nucleotide-binding protein-like 3 like protein.	0.998
ALC57_00289	ALC57_04732	A0A151JSQ6	A0A195EDM8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative ribosome biogenesis protein RLP24.	0.997
ALC57_00289	ALC57_06172	A0A151JSQ6	A0A151J8Z0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome production factor 2 like protein.	0.998
ALC57_00289	ALC57_06518	A0A151JSQ6	A0A151J8G8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	ATP-dependent RNA helicase DDX24.	0.823
ALC57_00289	ALC57_07621	A0A151JSQ6	A0A151J863	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative ribosome production factor 1.	0.993
ALC57_00289	ALC57_07725	A0A151JSQ6	A0A195E4E8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.994
ALC57_00289	ALC57_07734	A0A151JSQ6	A0A195E532	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Protein MAK16 like protein A.	0.987
ALC57_00289	ALC57_07973	A0A151JSQ6	A0A195E3J1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RNA helicase.	0.961
ALC57_00289	ALC57_08643	A0A151JSQ6	A0A195E1E2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosomal RNA processing protein 1 like protein.	0.994
ALC57_00289	ALC57_09312	A0A151JSQ6	A0A151J5H8	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Suppressor of SWI4 1 like protein.	0.977
ALC57_00289	ALC57_09821	A0A151JSQ6	A0A195DZ83	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RNA-binding protein 34.	0.904
ALC57_00289	ALC57_09973	A0A151JSQ6	A0A195DYB0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Putative ATP-dependent RNA helicase pitchoune; Belongs to the DEAD box helicase family.	0.992
ALC57_00289	ALC57_10062	A0A151JSQ6	A0A195DXU2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RNA helicase.	0.992