(59 nodes) Tube formation network (Trachymyrmex cornetzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC57_05770	Uncharacterized protein. (104 aa)
	ALC57_05119	Uncharacterized protein. (268 aa)
	ALC57_05096	Uncharacterized protein. (161 aa)
	ALC57_04428	Uncharacterized protein. (184 aa)
	ALC57_03891	Uncharacterized protein. (128 aa)
	ALC57_02746	Matrix metalloproteinase-16. (192 aa)
	ALC57_02684	Uncharacterized protein. (125 aa)
	ALC57_02747	Matrix metalloproteinase-14. (193 aa)
	ALC57_02550	Uncharacterized protein. (193 aa)
	ALC57_00197	Uncharacterized protein. (259 aa)
	ALC57_00358	Protein fuzzy like protein. (400 aa)
	ALC57_00137	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	ALC57_18976	UDP-N-acetylhexosamine pyrophosphorylase. (471 aa)
	ALC57_18139	Survival motor neuron protein. (212 aa)
	ALC57_01808	Zinc finger protein ZPR1. (444 aa)
	ALC57_01751	Uncharacterized protein. (289 aa)
	ALC57_01703	Protein transport protein Sec24C. (1033 aa)
	ALC57_03853	Dynein heavy chain, cytoplasmic. (4733 aa)
	ALC57_03878	Ras-like GTP-binding protein Rho1. (187 aa)
	ALC57_06227	Matrix metalloproteinase-25. (642 aa)
	ALC57_06997	Phosphatidylinositide phosphatase SAC1. (583 aa)
	ALC57_07244	WD repeat-containing protein 7. (1521 aa)
	ALC57_07681	Ras-related protein Rab-35. (184 aa)
	ALC57_17526	Microtubule-associated protein. (1212 aa)
	ALC57_13449	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1. (1829 aa)
	ALC57_12700	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (767 aa)
	ALC57_10436	Matrix metalloproteinase-14. (555 aa)
	ALC57_09814	Von Hippel-Lindau disease tumor suppressor. (161 aa)
	ALC57_09506	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (489 aa)
	ALC57_09507	E3 ubiquitin-protein ligase MIB1. (400 aa)
	ALC57_08116	Uncharacterized protein. (843 aa)
	ALC57_10385	Matrix metalloproteinase-16. (146 aa)
	ALC57_10386	Uncharacterized protein. (188 aa)
	ALC57_16447	Matrix metalloproteinase-14. (456 aa)
	ALC57_16270	Uncharacterized protein. (184 aa)
	ALC57_15705	Uncharacterized protein. (390 aa)
	ALC57_15141	Interstitial collagenase. (219 aa)
	ALC57_14854	Serine proteinase stubble; Belongs to the peptidase S1 family. (1163 aa)
	ALC57_14531	Matrix metalloproteinase-14. (273 aa)
	ALC57_12888	Uncharacterized protein. (291 aa)
	ALC57_10164	Synaptotagmin-like protein 5. (3450 aa)
	ALC57_11713	Matrix metalloproteinase-14. (208 aa)
	ALC57_11189	Plectin. (197 aa)
	ALC57_18508	Matrix metalloproteinase-14. (372 aa)
	ALC57_18002	DmX-like protein 2. (3173 aa)
	ALC57_16809	ALMS_motif domain-containing protein. (1526 aa)
	ALC57_11186	Dystonin. (7356 aa)
	ALC57_11068	Uncharacterized protein. (183 aa)
	ALC57_11009	Uncharacterized protein. (345 aa)
	ALC57_01755	Homeobox protein cut. (1462 aa)
	ALC57_01749	Uncharacterized protein. (269 aa)
	ALC57_09554	TBC1 domain family member 10B. (391 aa)
	ALC57_09452	Collagenase 3. (160 aa)
	ALC57_09310	72 kDa type IV collagenase. (298 aa)
	ALC57_08616	Talin-1. (2869 aa)
	ALC57_08561	Uncharacterized protein. (231 aa)
	ALC57_07929	Protein trachealess. (875 aa)
	ALC57_06381	Keratin, type I microfibrillar 48 kDa, component 8C-1. (827 aa)
	ALC57_06182	72 kDa type IV collagenase. (326 aa)

Your Current Organism:

Trachymyrmex cornetzi

NCBI taxonomy Id: 471704
Other names: T. cornetzi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC57_00137	ALC57_01703	A0A151K2Z8	A0A195EKE7	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Protein transport protein Sec24C.	0.852
ALC57_00137	ALC57_12700	A0A151K2Z8	A0A195DQL6	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.923
ALC57_01703	ALC57_00137	A0A195EKE7	A0A151K2Z8	Protein transport protein Sec24C.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.852
ALC57_01703	ALC57_09507	A0A195EKE7	A0A195DZN0	Protein transport protein Sec24C.	E3 ubiquitin-protein ligase MIB1.	0.525
ALC57_01703	ALC57_12700	A0A195EKE7	A0A195DQL6	Protein transport protein Sec24C.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.998
ALC57_02746	ALC57_06227	A0A151JN26	A0A195E8Z7	Matrix metalloproteinase-16.	Matrix metalloproteinase-25.	0.440
ALC57_02746	ALC57_16447	A0A151JN26	A0A151IV40	Matrix metalloproteinase-16.	Matrix metalloproteinase-14.	0.432
ALC57_02746	ALC57_18508	A0A151JN26	A0A151IRQ4	Matrix metalloproteinase-16.	Matrix metalloproteinase-14.	0.407
ALC57_03853	ALC57_09506	A0A195EG11	A0A195DZB1	Dynein heavy chain, cytoplasmic.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.965
ALC57_03853	ALC57_13449	A0A195EG11	A0A195DN73	Dynein heavy chain, cytoplasmic.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.	0.603
ALC57_03878	ALC57_08616	A0A195EFA1	A0A151J6Q5	Ras-like GTP-binding protein Rho1.	Talin-1.	0.805
ALC57_03878	ALC57_09506	A0A195EFA1	A0A195DZB1	Ras-like GTP-binding protein Rho1.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.553
ALC57_03878	ALC57_09507	A0A195EFA1	A0A195DZN0	Ras-like GTP-binding protein Rho1.	E3 ubiquitin-protein ligase MIB1.	0.658
ALC57_03878	ALC57_09554	A0A195EFA1	A0A151J5B2	Ras-like GTP-binding protein Rho1.	TBC1 domain family member 10B.	0.551
ALC57_03878	ALC57_09814	A0A195EFA1	A0A195DYY2	Ras-like GTP-binding protein Rho1.	Von Hippel-Lindau disease tumor suppressor.	0.577
ALC57_03878	ALC57_11186	A0A195EFA1	A0A151J318	Ras-like GTP-binding protein Rho1.	Dystonin.	0.743
ALC57_03878	ALC57_11189	A0A195EFA1	A0A151J2V3	Ras-like GTP-binding protein Rho1.	Plectin.	0.743
ALC57_03878	ALC57_13449	A0A195EFA1	A0A195DN73	Ras-like GTP-binding protein Rho1.	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1.	0.763
ALC57_06227	ALC57_02746	A0A195E8Z7	A0A151JN26	Matrix metalloproteinase-25.	Matrix metalloproteinase-16.	0.440
ALC57_06227	ALC57_09452	A0A195E8Z7	A0A151J5K5	Matrix metalloproteinase-25.	Collagenase 3.	0.764