(24 nodes) Embryonic hemopoiesis network (Trachymyrmex cornetzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC57_07749	Receptor protein-tyrosine kinase. (1714 aa)
	ALC57_17711	Rho-related GTP-binding protein RhoU. (224 aa)
	ALC57_16122	PDGF_2 domain-containing protein. (691 aa)
	ALC57_16124	Uncharacterized protein. (172 aa)
	ALC57_10542	Ras-related protein Rac1. (192 aa)
	ALC57_10537	Protein singed. (549 aa)
	ALC57_09563	Integrin beta; Belongs to the integrin beta chain family. (890 aa)
	ALC57_06364	Ras-related C3 botulinum toxin substrate 1. (195 aa)
	ALC57_05271	Ras-like GTP-binding protein RhoL. (187 aa)
	ALC57_18826	Integrin beta; Belongs to the integrin beta chain family. (824 aa)
	ALC57_07474	Programmed cell death protein 2. (355 aa)
	ALC57_17256	Transcription factor glial cells missing. (711 aa)
	ALC57_15371	Rap guanine nucleotide exchange factor 2. (1371 aa)
	ALC57_13522	CLIP-associating protein 2. (1381 aa)
	ALC57_13079	Integrin alpha-PS2; Belongs to the integrin alpha chain family. (1655 aa)
	ALC57_11112	Spastin; ATP-dependent microtubule severing protein. Microtubule severing may promote reorganization of cellular microtubule arrays and the release of microtubules from the microtubule organizing center following nucleation; Belongs to the AAA ATPase family. Spastin subfamily. (708 aa)
	ALC57_11159	Uncharacterized protein. (181 aa)
	ALC57_10366	Neurogenic locus Notch protein. (2446 aa)
	ALC57_09221	Ras-related protein Rap-1b. (184 aa)
	ALC57_08421	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta isoform; Belongs to the PI3/PI4-kinase family. (1704 aa)
	ALC57_03835	Cdc42 like protein. (191 aa)
	ALC57_03417	Cdc42 like protein. (191 aa)
	ALC57_03878	Ras-like GTP-binding protein Rho1. (187 aa)
	ALC57_07261	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial. (247 aa)

Your Current Organism:

Trachymyrmex cornetzi

NCBI taxonomy Id: 471704
Other names: T. cornetzi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC57_03417	ALC57_03835	A0A195EFM6	A0A195EFX4	Cdc42 like protein.	Cdc42 like protein.	0.837
ALC57_03417	ALC57_03878	A0A195EFM6	A0A195EFA1	Cdc42 like protein.	Ras-like GTP-binding protein Rho1.	0.926
ALC57_03417	ALC57_05271	A0A195EFM6	A0A151JB36	Cdc42 like protein.	Ras-like GTP-binding protein RhoL.	0.613
ALC57_03417	ALC57_07749	A0A195EFM6	A0A195E548	Cdc42 like protein.	Receptor protein-tyrosine kinase.	0.640
ALC57_03417	ALC57_08421	A0A195EFM6	A0A195E2Y4	Cdc42 like protein.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta isoform; Belongs to the PI3/PI4-kinase family.	0.832
ALC57_03417	ALC57_09221	A0A195EFM6	A0A195E0B7	Cdc42 like protein.	Ras-related protein Rap-1b.	0.606
ALC57_03417	ALC57_09563	A0A195EFM6	A0A151J572	Cdc42 like protein.	Integrin beta; Belongs to the integrin beta chain family.	0.689
ALC57_03417	ALC57_10366	A0A195EFM6	A0A195DWW8	Cdc42 like protein.	Neurogenic locus Notch protein.	0.429
ALC57_03417	ALC57_15371	A0A195EFM6	A0A195DIC9	Cdc42 like protein.	Rap guanine nucleotide exchange factor 2.	0.666
ALC57_03417	ALC57_18826	A0A195EFM6	A0A195D7K9	Cdc42 like protein.	Integrin beta; Belongs to the integrin beta chain family.	0.689
ALC57_03835	ALC57_03417	A0A195EFX4	A0A195EFM6	Cdc42 like protein.	Cdc42 like protein.	0.837
ALC57_03835	ALC57_03878	A0A195EFX4	A0A195EFA1	Cdc42 like protein.	Ras-like GTP-binding protein Rho1.	0.926
ALC57_03835	ALC57_05271	A0A195EFX4	A0A151JB36	Cdc42 like protein.	Ras-like GTP-binding protein RhoL.	0.613
ALC57_03835	ALC57_07749	A0A195EFX4	A0A195E548	Cdc42 like protein.	Receptor protein-tyrosine kinase.	0.640
ALC57_03835	ALC57_08421	A0A195EFX4	A0A195E2Y4	Cdc42 like protein.	Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta isoform; Belongs to the PI3/PI4-kinase family.	0.832
ALC57_03835	ALC57_09221	A0A195EFX4	A0A195E0B7	Cdc42 like protein.	Ras-related protein Rap-1b.	0.606
ALC57_03835	ALC57_09563	A0A195EFX4	A0A151J572	Cdc42 like protein.	Integrin beta; Belongs to the integrin beta chain family.	0.689
ALC57_03835	ALC57_10366	A0A195EFX4	A0A195DWW8	Cdc42 like protein.	Neurogenic locus Notch protein.	0.429
ALC57_03835	ALC57_15371	A0A195EFX4	A0A195DIC9	Cdc42 like protein.	Rap guanine nucleotide exchange factor 2.	0.666
ALC57_03835	ALC57_18826	A0A195EFX4	A0A195D7K9	Cdc42 like protein.	Integrin beta; Belongs to the integrin beta chain family.	0.689