(32 nodes) Sarcomere organization network (Trachymyrmex cornetzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC57_12386	Dystroglycan. (1294 aa)
	ALC57_13079	Integrin alpha-PS2; Belongs to the integrin alpha chain family. (1655 aa)
	ALC57_14482	Actin-interacting protein 1. (599 aa)
	ALC57_15191	Guanine nucleotide-releasing factor 2. (1139 aa)
	ALC57_18212	Chondroitin sulfate proteoglycan 4. (2400 aa)
	ALC57_18152	Calcineurin subunit B type 2. (162 aa)
	ALC57_18963	Troponin T. (448 aa)
	ALC57_17401	Protein MICAL-3. (2962 aa)
	ALC57_16605	CUGBP Elav-like family member 2. (405 aa)
	ALC57_15772	Protein MICAL-3. (634 aa)
	ALC57_12257	Flightin. (148 aa)
	ALC57_12082	Protein hu-li tai shao. (1553 aa)
	ALC57_18826	Integrin beta; Belongs to the integrin beta chain family. (824 aa)
	ALC57_00073	Titin. (128 aa)
	ALC57_01072	LIM and SH3 domain protein F42H10.3. (260 aa)
	ALC57_05028	Muscle M-line assembly protein unc-89. (5702 aa)
	ALC57_05229	Protein diaphanous. (458 aa)
	ALC57_05504	Titin. (16967 aa)
	ALC57_05508	Muscle M-line assembly protein unc-89. (3543 aa)
	ALC57_06029	Nucleosomal histone kinase 1. (531 aa)
	ALC57_08616	Talin-1. (2869 aa)
	ALC57_09563	Integrin beta; Belongs to the integrin beta chain family. (890 aa)
	ALC57_09713	Ankyrin repeat and KH domain-containing protein 1. (2933 aa)
	ALC57_09858	Titin. (9590 aa)
	ALC57_11551	Protein O-mannosyltransferase 1. (788 aa)
	ALC57_11572	Serine/threonine-protein kinase VRK1. (555 aa)
	ALC57_11513	Myosin heavy chain, muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1945 aa)
	ALC57_11577	Protein diaphanous. (872 aa)
	ALC57_04243	Cytospin-A. (962 aa)
	ALC57_07314	Filamin-A. (2530 aa)
	ALC57_08753	Zeta-sarcoglycan. (377 aa)
	ALC57_09975	KH domain-containing protein. (332 aa)

Your Current Organism:

Trachymyrmex cornetzi

NCBI taxonomy Id: 471704
Other names: T. cornetzi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC57_00073	ALC57_01072	A0A151K2T7	A0A151JQP0	Titin.	LIM and SH3 domain protein F42H10.3.	0.535
ALC57_00073	ALC57_05028	A0A151K2T7	A0A151JBU0	Titin.	Muscle M-line assembly protein unc-89.	0.909
ALC57_00073	ALC57_05229	A0A151K2T7	A0A151JBQ0	Titin.	Protein diaphanous.	0.533
ALC57_00073	ALC57_05504	A0A151K2T7	A0A151JAL2	Titin.	Titin.	0.712
ALC57_00073	ALC57_07314	A0A151K2T7	A0A195E6D5	Titin.	Filamin-A.	0.587
ALC57_00073	ALC57_08616	A0A151K2T7	A0A151J6Q5	Titin.	Talin-1.	0.745
ALC57_00073	ALC57_09563	A0A151K2T7	A0A151J572	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.867
ALC57_00073	ALC57_09713	A0A151K2T7	A0A151J537	Titin.	Ankyrin repeat and KH domain-containing protein 1.	0.464
ALC57_00073	ALC57_09858	A0A151K2T7	A0A151J500	Titin.	Titin.	0.959
ALC57_00073	ALC57_11513	A0A151K2T7	A0A151J2G8	Titin.	Myosin heavy chain, muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.947
ALC57_00073	ALC57_11577	A0A151K2T7	A0A151J2E5	Titin.	Protein diaphanous.	0.533
ALC57_00073	ALC57_12082	A0A151K2T7	A0A151J1H2	Titin.	Protein hu-li tai shao.	0.539
ALC57_00073	ALC57_12257	A0A151K2T7	A0A151J1D5	Titin.	Flightin.	0.482
ALC57_00073	ALC57_13079	A0A151K2T7	A0A195DP24	Titin.	Integrin alpha-PS2; Belongs to the integrin alpha chain family.	0.893
ALC57_00073	ALC57_14482	A0A151K2T7	A0A195DLV2	Titin.	Actin-interacting protein 1.	0.552
ALC57_00073	ALC57_18152	A0A151K2T7	A0A195D9U5	Titin.	Calcineurin subunit B type 2.	0.508
ALC57_00073	ALC57_18826	A0A151K2T7	A0A195D7K9	Titin.	Integrin beta; Belongs to the integrin beta chain family.	0.867
ALC57_00073	ALC57_18963	A0A151K2T7	A0A195D7Z8	Titin.	Troponin T.	0.823
ALC57_01072	ALC57_00073	A0A151JQP0	A0A151K2T7	LIM and SH3 domain protein F42H10.3.	Titin.	0.535
ALC57_01072	ALC57_05504	A0A151JQP0	A0A151JAL2	LIM and SH3 domain protein F42H10.3.	Titin.	0.455