(36 nodes) Regulation of embryonic development network (Trachymyrmex cornetzi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALC57_09975	KH domain-containing protein. (332 aa)
	ALC57_09827	Serine proteinase stubble. (799 aa)
	ALC57_09221	Ras-related protein Rap-1b. (184 aa)
	ALC57_08104	Cuticlin-1. (624 aa)
	ALC57_00886	Otoferlin. (2048 aa)
	ALC57_01610	Tight junction protein ZO-1; Belongs to the MAGUK family. (1487 aa)
	ALC57_02795	Mitogen-activated protein kinase kinase kinase 9. (1682 aa)
	ALC57_03658	Laminin subunit alpha. (3709 aa)
	ALC57_03878	Ras-like GTP-binding protein Rho1. (187 aa)
	ALC57_04832	Torso-like protein. (456 aa)
	ALC57_04502	Guanine nucleotide-binding protein subunit alpha like protein. (367 aa)
	ALC57_07681	Ras-related protein Rab-35. (184 aa)
	ALC57_10984	Pleckstrin homology-like domain family B member 2. (1377 aa)
	ALC57_09770	Guanine nucleotide-binding protein subunit gamma-1. (70 aa)
	ALC57_18798	Nuclear factor. (1539 aa)
	ALC57_18495	Wiskott-Aldrich syndrome protein. (527 aa)
	ALC57_17605	Cuticlin-1. (610 aa)
	ALC57_17069	Fer-1-like protein 4. (1704 aa)
	ALC57_16811	Docking protein 2. (558 aa)
	ALC57_12293	Cuticlin-1. (711 aa)
	ALC57_11577	Protein diaphanous. (872 aa)
	ALC57_10521	Tyrosine-protein kinase. (1021 aa)
	ALC57_08914	Putative E3 ubiquitin-protein ligase TRIP12. (2703 aa)
	ALC57_08850	Exosome complex exonuclease RRP40. (244 aa)
	ALC57_07123	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (977 aa)
	ALC57_05229	Protein diaphanous. (458 aa)
	ALC57_03711	Tyrosine-protein kinase hopscotch. (1140 aa)
	ALC57_00935	Protein tramtrack, alpha isoform. (808 aa)
	ALC57_01981	Rho guanine nucleotide exchange factor 12. (1620 aa)
	ALC57_16177	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1. (287 aa)
	ALC57_15371	Rap guanine nucleotide exchange factor 2. (1371 aa)
	ALC57_13389	Uncharacterized protein. (344 aa)
	ALC57_13388	Uncharacterized protein. (562 aa)
	ALC57_11499	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1. (440 aa)
	ALC57_10940	Uncharacterized protein. (502 aa)
	ALC57_10939	Uncharacterized protein. (490 aa)

Your Current Organism:

Trachymyrmex cornetzi

NCBI taxonomy Id: 471704
Other names: T. cornetzi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC57_00935	ALC57_10939	A0A195EP50	A0A195DVG8	Protein tramtrack, alpha isoform.	Uncharacterized protein.	0.402
ALC57_00935	ALC57_10940	A0A195EP50	A0A195DV36	Protein tramtrack, alpha isoform.	Uncharacterized protein.	0.402
ALC57_00935	ALC57_12293	A0A195EP50	A0A151J1A2	Protein tramtrack, alpha isoform.	Cuticlin-1.	0.422
ALC57_01610	ALC57_02795	A0A195EL61	A0A195EHU7	Tight junction protein ZO-1; Belongs to the MAGUK family.	Mitogen-activated protein kinase kinase kinase 9.	0.486
ALC57_01610	ALC57_03711	A0A195EL61	A0A151JM27	Tight junction protein ZO-1; Belongs to the MAGUK family.	Tyrosine-protein kinase hopscotch.	0.636
ALC57_01610	ALC57_03878	A0A195EL61	A0A195EFA1	Tight junction protein ZO-1; Belongs to the MAGUK family.	Ras-like GTP-binding protein Rho1.	0.759
ALC57_01610	ALC57_05229	A0A195EL61	A0A151JBQ0	Tight junction protein ZO-1; Belongs to the MAGUK family.	Protein diaphanous.	0.679
ALC57_01610	ALC57_09221	A0A195EL61	A0A195E0B7	Tight junction protein ZO-1; Belongs to the MAGUK family.	Ras-related protein Rap-1b.	0.619
ALC57_01610	ALC57_10521	A0A195EL61	A0A151J429	Tight junction protein ZO-1; Belongs to the MAGUK family.	Tyrosine-protein kinase.	0.435
ALC57_01610	ALC57_11577	A0A195EL61	A0A151J2E5	Tight junction protein ZO-1; Belongs to the MAGUK family.	Protein diaphanous.	0.679
ALC57_01610	ALC57_15371	A0A195EL61	A0A195DIC9	Tight junction protein ZO-1; Belongs to the MAGUK family.	Rap guanine nucleotide exchange factor 2.	0.887
ALC57_01981	ALC57_03711	A0A151JPR7	A0A151JM27	Rho guanine nucleotide exchange factor 12.	Tyrosine-protein kinase hopscotch.	0.856
ALC57_01981	ALC57_03878	A0A151JPR7	A0A195EFA1	Rho guanine nucleotide exchange factor 12.	Ras-like GTP-binding protein Rho1.	0.994
ALC57_01981	ALC57_04502	A0A151JPR7	A0A195EBW9	Rho guanine nucleotide exchange factor 12.	Guanine nucleotide-binding protein subunit alpha like protein.	0.993
ALC57_01981	ALC57_09221	A0A151JPR7	A0A195E0B7	Rho guanine nucleotide exchange factor 12.	Ras-related protein Rap-1b.	0.769
ALC57_01981	ALC57_11499	A0A151JPR7	A0A195DTT4	Rho guanine nucleotide exchange factor 12.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.713
ALC57_02795	ALC57_01610	A0A195EHU7	A0A195EL61	Mitogen-activated protein kinase kinase kinase 9.	Tight junction protein ZO-1; Belongs to the MAGUK family.	0.486
ALC57_02795	ALC57_03711	A0A195EHU7	A0A151JM27	Mitogen-activated protein kinase kinase kinase 9.	Tyrosine-protein kinase hopscotch.	0.811
ALC57_02795	ALC57_03878	A0A195EHU7	A0A195EFA1	Mitogen-activated protein kinase kinase kinase 9.	Ras-like GTP-binding protein Rho1.	0.738
ALC57_02795	ALC57_04502	A0A195EHU7	A0A195EBW9	Mitogen-activated protein kinase kinase kinase 9.	Guanine nucleotide-binding protein subunit alpha like protein.	0.622