STRINGSTRING
Dfer_0148 Dfer_0148 Dfer_0149 Dfer_0149 Dfer_0482 Dfer_0482 Dfer_0582 Dfer_0582 Dfer_0597 Dfer_0597 Dfer_0598 Dfer_0598 Dfer_0600 Dfer_0600 Dfer_0601 Dfer_0601 Dfer_0602 Dfer_0602 Dfer_0733 Dfer_0733 Dfer_0734 Dfer_0734 Dfer_0757 Dfer_0757 Dfer_0758 Dfer_0758 Dfer_0763 Dfer_0763 Dfer_0764 Dfer_0764 Dfer_0799 Dfer_0799 Dfer_0800 Dfer_0800 Dfer_0804 Dfer_0804 Dfer_0805 Dfer_0805 Dfer_0857 Dfer_0857 Dfer_0858 Dfer_0858 Dfer_1004 Dfer_1004 Dfer_1005 Dfer_1005 Dfer_1238 Dfer_1238 Dfer_1278 Dfer_1278 Dfer_1279 Dfer_1279 Dfer_1280 Dfer_1280 Dfer_1281 Dfer_1281 Dfer_1282 Dfer_1282 Dfer_1283 Dfer_1283 Dfer_1301 Dfer_1301 Dfer_1315 Dfer_1315 Dfer_1316 Dfer_1316 Dfer_1317 Dfer_1317 Dfer_1443 Dfer_1443 Dfer_1444 Dfer_1444 Dfer_1445 Dfer_1445 Dfer_1446 Dfer_1446 Dfer_1447 Dfer_1447 Dfer_1473 Dfer_1473 Dfer_1474 Dfer_1474 Dfer_1475 Dfer_1475 Dfer_1502 Dfer_1502 Dfer_1503 Dfer_1503 Dfer_1629 Dfer_1629 Dfer_1630 Dfer_1630 Dfer_2254 Dfer_2254 Dfer_2255 Dfer_2255 Dfer_2256 Dfer_2256 Dfer_2353 Dfer_2353 Dfer_2354 Dfer_2354 Dfer_2355 Dfer_2355 Dfer_3279 Dfer_3279 Dfer_3280 Dfer_3280 Dfer_4385 Dfer_4385 Dfer_4386 Dfer_4386 Dfer_4523 Dfer_4523 Dfer_4524 Dfer_4524 Dfer_4820 Dfer_4820 Dfer_5140 Dfer_5140 Dfer_5141 Dfer_5141 Dfer_5142 Dfer_5142 Dfer_5143 Dfer_5143 Dfer_5299 Dfer_5299 Dfer_5300 Dfer_5300 Dfer_5302 Dfer_5302 Dfer_5303 Dfer_5303 Dfer_5311 Dfer_5311 Dfer_5312 Dfer_5312 Dfer_5358 Dfer_5358 Dfer_5359 Dfer_5359 Dfer_5360 Dfer_5360 Dfer_5361 Dfer_5361 Dfer_5362 Dfer_5362 Dfer_5404 Dfer_5404 Dfer_5405 Dfer_5405 Dfer_5453 Dfer_5453 Dfer_5454 Dfer_5454 Dfer_5455 Dfer_5455 Dfer_5456 Dfer_5456 Dfer_5457 Dfer_5457 Dfer_5459 Dfer_5459 Dfer_5460 Dfer_5460 Dfer_5461 Dfer_5461 Dfer_5645 Dfer_5645
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0148Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator. (251 aa)
Dfer_0149Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; Two component regulator propeller; Two component regulator three Y domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response. (1192 aa)
Dfer_0482PFAM: KWG Leptospira repeat protein; KEGG: cts:Ctha_0023 KWG Leptospira repeat protein. (453 aa)
Dfer_0582Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3976 LytTR family two component transcriptional regulator. (253 aa)
Dfer_0597Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4134 LytTR family two component transcriptional regulator. (242 aa)
Dfer_0598PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS. (356 aa)
Dfer_0600Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_4908 LytTR family two component transcriptional regulator. (265 aa)
Dfer_0601Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: pdi:BDI_0804 putative two-component system sensor protein histidine kinase. (359 aa)
Dfer_0602Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bth:BT_3967 putative two-component system sensor protein histidine kinase. (356 aa)
Dfer_0733Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4564 LytTR family two component transcriptional regulator. (243 aa)
Dfer_0734PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4563 signal transduction histidine kinase, LytS. (348 aa)
Dfer_0757PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4002 signal transduction histidine kinase, LytS. (339 aa)
Dfer_0758Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4001 LytTR family two component transcriptional regulator. (256 aa)
Dfer_0763Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region. (343 aa)
Dfer_0764Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_5028 LytTR family two component transcriptional regulator. (245 aa)
Dfer_0799PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4913 signal transduction histidine kinase, LytS. (342 aa)
Dfer_0800Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gfo:GFO_1017 two-component system response regulator containing LytTR DNA-binding domain. (251 aa)
Dfer_0804Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3229 LytTR family two component transcriptional regulator. (251 aa)
Dfer_0805PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_3230 signal transduction histidine kinase, LytS. (365 aa)
Dfer_0857Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fps:FP1651 two-component system sensor. (342 aa)
Dfer_0858PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pdi:BDI_2554 putative two-component response regulator. (141 aa)
Dfer_1004Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: sru:SRU_2855 two-component system response regulator protein. (257 aa)
Dfer_1005Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ote:Oter_3912 signal transduction histidine kinase, LytS. (390 aa)
Dfer_1238Hypothetical protein. (118 aa)
Dfer_1278Hypothetical protein. (126 aa)
Dfer_1279Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator. (248 aa)
Dfer_1280Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: gfo:GFO_2625 two-component system sensor histidine kinase. (1015 aa)
Dfer_1281Hypothetical protein. (39 aa)
Dfer_1282PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_3668 putative TonB-dependent receptor. (852 aa)
Dfer_1283KEGG: aba:Acid345_3020 conserved hypothetical signal peptide protein. (238 aa)
Dfer_1301Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_5028 LytTR family two component transcriptional regulator. (245 aa)
Dfer_1315Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bfs:BF3660 hypothetical protein. (333 aa)
Dfer_1316Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bth:BT_3967 putative two-component system sensor protein histidine kinase. (372 aa)
Dfer_1317Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: pdi:BDI_0805 two-component system response regulator. (261 aa)
Dfer_1443Transcriptional regulator, AraC family; KEGG: bfr:BF3490 transcription regulator. (246 aa)
Dfer_1444Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fps:FP1647 two-component system response regulatory protein. (256 aa)
Dfer_1445Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fps:FP1651 two-component system sensor. (366 aa)
Dfer_1446Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_0268 AraC family transcriptional regulator. (344 aa)
Dfer_1447PFAM: Cupin 2 conserved barrel domain protein; KEGG: hau:Haur_5028 cupin 2 domain-containing protein. (190 aa)
Dfer_1473Hypothetical protein. (151 aa)
Dfer_1474PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4002 signal transduction histidine kinase, LytS. (339 aa)
Dfer_1475Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_4001 LytTR family two component transcriptional regulator. (255 aa)
Dfer_1502Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator. (254 aa)
Dfer_1503Putative phytochrome sensor protein; PFAM: histidine kinase internal region; Two component regulator propeller; GAF domain protein; Two component regulator three Y domain protein; SMART: GAF domain protein; KEGG: cps:CPS_2607 GGDEF domain-containing protein. (1182 aa)
Dfer_1629PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_2643 two-component system sensor histidine kinase. (600 aa)
Dfer_1630Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gfo:GFO_2644 two-component system response regulator containing LytTR DNA-binding domain. (243 aa)
Dfer_2254Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bth:BT_3967 putative two-component system sensor protein histidine kinase. (366 aa)
Dfer_2255Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bfs:BF3660 hypothetical protein. (359 aa)
Dfer_2256Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4908 LytTR family two component transcriptional regulator. (262 aa)
Dfer_2353Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: sus:Acid_4777 histidine kinase. (1021 aa)
Dfer_2354Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3229 LytTR family two component transcriptional regulator. (256 aa)
Dfer_2355Hypothetical protein. (93 aa)
Dfer_3279PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS. (356 aa)
Dfer_3280Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4134 LytTR family two component transcriptional regulator. (245 aa)
Dfer_4385Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; pentapeptide repeat protein; KEGG: sus:Acid_2181 signal transduction histidine kinase, LytS. (482 aa)
Dfer_4386Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: amc:MADE_01918 putative response regulator in two-component regulatory system. (260 aa)
Dfer_4523Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region. (365 aa)
Dfer_4524Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: gfo:GFO_2164 two-component response regulator containing LytTR DNA-binding domain. (240 aa)
Dfer_4820Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gfo:GFO_2644 two-component system response regulator containing LytTR DNA-binding domain. (244 aa)
Dfer_5140PFAM: Phosphoglycerate mutase; KEGG: chu:CHU_1756 phosphoglycerate mutase-like protein; Belongs to the phosphoglycerate mutase family. (214 aa)
Dfer_5141Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sru:SRU_0415 putative transmembrane sensor histidine kinase transcription regulator protein. (367 aa)
Dfer_5142Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: ote:Oter_1527 LytTR family two component transcriptional regulator. (244 aa)
Dfer_5143KEGG: amr:AM1_6347 hypothetical protein. (271 aa)
Dfer_5299PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS. (360 aa)
Dfer_5300Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_4134 LytTR family two component transcriptional regulator. (241 aa)
Dfer_5302PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_1681 signal transduction histidine kinase, LytS. (407 aa)
Dfer_5303Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: bth:BT_4566 two-component system response regulator protein. (261 aa)
Dfer_5311PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4913 signal transduction histidine kinase, LytS. (342 aa)
Dfer_5312Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fps:FP1647 two-component system response regulatory protein. (255 aa)
Dfer_5358Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: bfs:BF1931 putative two-component system response regulator. (235 aa)
Dfer_5359KEGG: csa:Csal_0509 hypothetical protein. (166 aa)
Dfer_5360Hypothetical protein. (168 aa)
Dfer_5361Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region. (357 aa)
Dfer_5362Hypothetical protein. (324 aa)
Dfer_5404Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bvu:BVU_2589 putative two-component system sensor kinase. (362 aa)
Dfer_5405Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fps:FP1647 two-component system response regulatory protein. (243 aa)
Dfer_5453PFAM: DoxX family protein; KEGG: amu:Amuc_0456 DoxX family protein. (136 aa)
Dfer_5454PFAM: isochorismatase hydrolase; KEGG: fjo:Fjoh_4273 isochorismatase hydrolase. (231 aa)
Dfer_5455PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: bch:Bcen2424_5911 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (292 aa)
Dfer_5456KEGG: fjo:Fjoh_4275 hypothetical protein. (453 aa)
Dfer_5457PFAM: Amidohydrolase 3; KEGG: bxe:Bxe_B2388 hypothetical protein. (593 aa)
Dfer_5459PFAM: histidine kinase dimerisation/phosphoacceptor; TPR repeat-containing protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: rci:LRC393 signal transduction histidine kinase. (749 aa)
Dfer_5460Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: cte:CT0108 sigma-54-dependent transcriptional regulator. (650 aa)
Dfer_5461PFAM: histidine kinase dimerisation/phosphoacceptor; TPR repeat-containing protein; ATP-binding region ATPase domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: rci:RCIX420 signal transduction histidine kinase, fragment 2. (732 aa)
Dfer_5645Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator. (248 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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