STRINGSTRING
Dfer_0757 Dfer_0757 Dfer_0758 Dfer_0758 Dfer_0763 Dfer_0763 Dfer_0764 Dfer_0764 Dfer_0799 Dfer_0799 Dfer_0800 Dfer_0800 Dfer_0804 Dfer_0804 Dfer_0805 Dfer_0805 Dfer_1004 Dfer_1004 Dfer_1005 Dfer_1005 Dfer_1301 Dfer_1301 Dfer_1315 Dfer_1315 Dfer_1316 Dfer_1316 Dfer_1317 Dfer_1317 Dfer_1502 Dfer_1502 Dfer_1503 Dfer_1503 Dfer_4385 Dfer_4385 Dfer_4386 Dfer_4386 Dfer_4523 Dfer_4523 Dfer_4524 Dfer_4524 Dfer_5299 Dfer_5299 Dfer_5300 Dfer_5300
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0757PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4002 signal transduction histidine kinase, LytS. (339 aa)
Dfer_0758Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_4001 LytTR family two component transcriptional regulator. (256 aa)
Dfer_0763Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region. (343 aa)
Dfer_0764Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_5028 LytTR family two component transcriptional regulator. (245 aa)
Dfer_0799PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4913 signal transduction histidine kinase, LytS. (342 aa)
Dfer_0800Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: gfo:GFO_1017 two-component system response regulator containing LytTR DNA-binding domain. (251 aa)
Dfer_0804Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3229 LytTR family two component transcriptional regulator. (251 aa)
Dfer_0805PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_3230 signal transduction histidine kinase, LytS. (365 aa)
Dfer_1004Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: sru:SRU_2855 two-component system response regulator protein. (257 aa)
Dfer_1005Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; KEGG: ote:Oter_3912 signal transduction histidine kinase, LytS. (390 aa)
Dfer_1301Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_5028 LytTR family two component transcriptional regulator. (245 aa)
Dfer_1315Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bfs:BF3660 hypothetical protein. (333 aa)
Dfer_1316Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: bth:BT_3967 putative two-component system sensor protein histidine kinase. (372 aa)
Dfer_1317Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: pdi:BDI_0805 two-component system response regulator. (261 aa)
Dfer_1502Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: chu:CHU_0254 response regulator. (254 aa)
Dfer_1503Putative phytochrome sensor protein; PFAM: histidine kinase internal region; Two component regulator propeller; GAF domain protein; Two component regulator three Y domain protein; SMART: GAF domain protein; KEGG: cps:CPS_2607 GGDEF domain-containing protein. (1182 aa)
Dfer_4385Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; pentapeptide repeat protein; KEGG: sus:Acid_2181 signal transduction histidine kinase, LytS. (482 aa)
Dfer_4386Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: amc:MADE_01918 putative response regulator in two-component regulatory system. (260 aa)
Dfer_4523Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_2031 histidine kinase internal region. (365 aa)
Dfer_4524Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: gfo:GFO_2164 two-component response regulator containing LytTR DNA-binding domain. (240 aa)
Dfer_5299PFAM: histidine kinase internal region; KEGG: fjo:Fjoh_4133 signal transduction histidine kinase, LytS. (360 aa)
Dfer_5300Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: fjo:Fjoh_4134 LytTR family two component transcriptional regulator. (241 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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