STRINGSTRING
Dfer_3466 Dfer_3466 Dfer_3467 Dfer_3467 ctaB ctaB Dfer_3470 Dfer_3470 Dfer_3471 Dfer_3471
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_3466PFAM: cytochrome c oxidase subunit III; KEGG: chu:CHU_2202 cytochrome c oxidase, subunit III. (256 aa)
Dfer_3467PFAM: cytochrome c oxidase subunit III; KEGG: chu:CHU_2203 cytochrome c oxidase, subunit III. (195 aa)
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (297 aa)
Dfer_3470PFAM: cytochrome c oxidase subunit I; KEGG: chu:CHU_2206 cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (627 aa)
Dfer_3471Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (370 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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