STRINGSTRING
Dfer_0171 Dfer_0171 Dfer_0260 Dfer_0260 Dfer_0294 Dfer_0294 Dfer_0337 Dfer_0337 Dfer_0338 Dfer_0338 Dfer_0372 Dfer_0372 Dfer_0392 Dfer_0392 Dfer_0393 Dfer_0393 Dfer_0394 Dfer_0394 Dfer_0507 Dfer_0507 Dfer_0536 Dfer_0536 Dfer_0559 Dfer_0559 Dfer_0792 Dfer_0792 Dfer_0812 Dfer_0812 Dfer_0854 Dfer_0854 Dfer_0899 Dfer_0899 Dfer_0990 Dfer_0990 Dfer_1132 Dfer_1132 Dfer_1135 Dfer_1135 Dfer_1463 Dfer_1463 Dfer_1489 Dfer_1489 Dfer_1574 Dfer_1574 Dfer_1604 Dfer_1604 Dfer_1607 Dfer_1607 Dfer_1748 Dfer_1748 Dfer_1754 Dfer_1754 Dfer_1944 Dfer_1944 Dfer_2193 Dfer_2193 Dfer_2246 Dfer_2246 Dfer_2318 Dfer_2318 Dfer_2328 Dfer_2328 Dfer_2334 Dfer_2334 Dfer_2512 Dfer_2512 Dfer_2513 Dfer_2513 Dfer_2525 Dfer_2525 Dfer_3237 Dfer_3237 Dfer_3323 Dfer_3323 Dfer_3324 Dfer_3324 Dfer_3325 Dfer_3325 Dfer_5165 Dfer_5165 Dfer_5313 Dfer_5313 Dfer_5316 Dfer_5316 Dfer_5317 Dfer_5317 Dfer_5571 Dfer_5571 Dfer_5579 Dfer_5579 Dfer_5581 Dfer_5581 Dfer_5761 Dfer_5761
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0171KEGG: fjo:Fjoh_3925 GAF sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein. (868 aa)
Dfer_0260KEGG: gfo:GFO_0848 two-component system sensor histidine kinase/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein. (1287 aa)
Dfer_0294KEGG: chu:CHU_1901 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein; PAC repeat-containing protein. (799 aa)
Dfer_0337PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3787 response regulator receiver protein. (126 aa)
Dfer_0338KEGG: chu:CHU_1663 sensor for ctr capsule biosynthesis, histidine kinase acting on RcsB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (568 aa)
Dfer_0372PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: nmu:Nmul_A2385 response regulator receiver domain-containing protein. (141 aa)
Dfer_0392PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: fjo:Fjoh_3353 response regulator receiver protein. (121 aa)
Dfer_0393Histidine kinase; KEGG: fjo:Fjoh_3354 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein. (1200 aa)
Dfer_0394PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_3355 response regulator receiver sensor signal transduction histidine kinase. (531 aa)
Dfer_0507PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_1900 response regulator. (299 aa)
Dfer_0536Histidine kinase; PFAM: response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; ATP-binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid. (1324 aa)
Dfer_0559Histidine kinase; PFAM: response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; ATP-binding region ATPase domain protein; helix- turn-helix- domain containing protein AraC type; histidine kinase A domain protein; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_2019 histidine kinase. (1327 aa)
Dfer_0792Histidine kinase; KEGG: pdi:BDI_3101 two-component system sensor histidine kinase/response regulator, hybrid; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: ATP-binding region ATPase domain protein; response regulator receiver; helix-turn-helix- domain containing protein AraC type; histidine kinase A domain protein. (1378 aa)
Dfer_0812Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid. (1335 aa)
Dfer_0854PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; serine/threonine protein kinase; GAF domain protein; KEGG: pth:PTH_0142 hypothetical protein. (1871 aa)
Dfer_0899KEGG: fjo:Fjoh_4842 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein. (491 aa)
Dfer_0990KEGG: cps:CPS_3258 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat- containing protein. (758 aa)
Dfer_1132KEGG: mgm:Mmc1_2114 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein. (647 aa)
Dfer_1135KEGG: chu:CHU_2080 sensor histidine kinase/response regulator fusion protein; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; GAF domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver. (1142 aa)
Dfer_1463KEGG: dge:Dgeo_2096 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein. (1118 aa)
Dfer_1489Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_0036 two-component system sensor histidine kinase/response regulator hybrid. (1404 aa)
Dfer_1574Histidine kinase; KEGG: pdi:BDI_3101 two-component system sensor histidine kinase/response regulator, hybrid; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein. (1378 aa)
Dfer_1604Two component transcriptional regulator, AraC family; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; periplasmic binding protein/LacI transcriptional regulator; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bvu:BVU_1666 putative two-component system sensor histidine kinase/response regulator, hybrid. (904 aa)
Dfer_1607KEGG: fjo:Fjoh_2076 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein. (1366 aa)
Dfer_1748KEGG: chu:CHU_1663 sensor for ctr capsule biosynthesis, histidine kinase acting on RcsB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein. (550 aa)
Dfer_1754KEGG: fjo:Fjoh_3862 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; helix- turn-helix- domain containing protein AraC type; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; helix-turn-helix- domain containing protein AraC type; histidine kinase A domain protein. (1344 aa)
Dfer_1944Histidine kinase; PFAM: response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; ATP-binding region ATPase domain protein; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response. (1278 aa)
Dfer_2193Histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bvu:BVU_2164 two-component system sensor histidine kinase/response regulator, hybrid. (1035 aa)
Dfer_2246Multi-sensor hybrid histidine kinase; KEGG: scl:sce0929 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein. (1084 aa)
Dfer_2318Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: ATP-binding region ATPase domain protein; response regulator receiver; helix-turn-helix- domain containing protein AraC type; histidine kinase A domain protein; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response. (1298 aa)
Dfer_2328PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_1900 response regulator. (157 aa)
Dfer_2334Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator propeller; SMART: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_2076 histidine kinase. (1052 aa)
Dfer_2512KEGG: fjo:Fjoh_3360 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein. (798 aa)
Dfer_2513PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_1900 response regulator. (149 aa)
Dfer_2525KEGG: mac:MA2013 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; ATP-binding region ATPase domain protein. (785 aa)
Dfer_3237KEGG: cth:Cthe_1825 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver. (854 aa)
Dfer_3323KEGG: ava:Ava_1559 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein. (445 aa)
Dfer_3324PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ana:all3766 two-component response regulator. (143 aa)
Dfer_3325KEGG: cts:Ctha_0019 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-3 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; response regulator receiver. (667 aa)
Dfer_5165PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: npu:Npun_R2902 response regulator receiver protein. (144 aa)
Dfer_5313Histidine kinase; KEGG: glo:Glov_0107 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein. (710 aa)
Dfer_5316Transcriptional regulator, Crp/Fnr family; PFAM: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; SMART: response regulator receiver; cyclic nucleotide-binding; regulatory protein Crp; KEGG: chu:CHU_1132 transcriptional regulator. (354 aa)
Dfer_5317KEGG: gfo:GFO_1419 two-component system sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein. (421 aa)
Dfer_5571Signal transduction histidine kinase with CheB and CheR activity; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (1218 aa)
Dfer_5579PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pca:Pcar_2566 two component signal transduction response regulator. (157 aa)
Dfer_5581PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: chu:CHU_1900 response regulator. (289 aa)
Dfer_5761KEGG: chu:CHU_2784 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein. (1204 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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