STRINGSTRING
Dfer_0161 Dfer_0161 Dfer_0274 Dfer_0274 Dfer_0275 Dfer_0275 Dfer_0717 Dfer_0717 Dfer_0856 Dfer_0856 Dfer_1089 Dfer_1089 Dfer_1606 Dfer_1606 Dfer_3401 Dfer_3401 Dfer_3565 Dfer_3565 Dfer_3566 Dfer_3566 Dfer_3651 Dfer_3651 Dfer_4011 Dfer_4011 Dfer_4094 Dfer_4094 Dfer_5351 Dfer_5351 Dfer_5352 Dfer_5352 Dfer_5603 Dfer_5603
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0161PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: cts:Ctha_0392 response regulator receiver protein. (129 aa)
Dfer_0274Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fjo:Fjoh_3400 two component transcriptional regulator. (232 aa)
Dfer_0275Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fjo:Fjoh_3399 integral membrane sensor signal transduction histidine kinase. (456 aa)
Dfer_0717Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: nis:NIS_1346 two-component sensor histidine kinase/response regulator. (396 aa)
Dfer_0856Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pdi:BDI_2480 two-component response regulator. (233 aa)
Dfer_1089PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aci:ACIAD3176 putative sensory transduction histidine kinase. (409 aa)
Dfer_1606Histidine kinase; PFAM: ATP-binding region ATPase domain protein; TPR repeat-containing protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Tetratricopeptide domain protein; KEGG: cts:Ctha_1885 histidine kinase. (710 aa)
Dfer_3401Histidine kinase; KEGG: chu:CHU_3041 two-component sensor histidine kinase, phosphate regulation; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (361 aa)
Dfer_3565Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: fjo:Fjoh_4969 integral membrane sensor signal transduction histidine kinase. (416 aa)
Dfer_3566Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fjo:Fjoh_4970 two component transcriptional regulator. (228 aa)
Dfer_3651Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bfs:BF3634 two-component system, transcriptional regulatory protein. (228 aa)
Dfer_4011Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: chu:CHU_3042 two-component response regulator. (236 aa)
Dfer_4094Histidine kinase; KEGG: bvu:BVU_0016 two-component system sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (612 aa)
Dfer_5351Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bth:BT_0733 two-component system sensor histidine kinase. (463 aa)
Dfer_5352Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: pdi:BDI_0763 two-component system response regulator. (224 aa)
Dfer_5603Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: noc:Noc_1167 signal transduction histidine kinase. (401 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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