STRINGSTRING
Dfer_0615 Dfer_0615 Dfer_0616 Dfer_0616 Dfer_1683 Dfer_1683 Dfer_1684 Dfer_1684 Dfer_2218 Dfer_2218 Dfer_2219 Dfer_2219 Dfer_4717 Dfer_4717 Dfer_4718 Dfer_4718
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0615PFAM: TonB-dependent receptor plug; KEGG: sru:SRU_2859 hypothetical protein. (1098 aa)
Dfer_0616KEGG: sru:SRU_2860 hypothetical protein. (570 aa)
Dfer_1683PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF0661 putative outer membrane protein. (1045 aa)
Dfer_1684PFAM: RagB/SusD domain protein; KEGG: bfs:BF0662 hypothetical protein. (611 aa)
Dfer_2218PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0510 hypothetical protein. (566 aa)
Dfer_2219PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0511 hypothetical protein. (1106 aa)
Dfer_4717PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_3963 hypothetical protein. (1155 aa)
Dfer_4718PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3964 hypothetical protein. (499 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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