STRINGSTRING
Dfer_0591 Dfer_0591 Dfer_0592 Dfer_0592 Dfer_0641 Dfer_0641 Dfer_0642 Dfer_0642 Dfer_0677 Dfer_0677 Dfer_0678 Dfer_0678 Dfer_0685 Dfer_0685 Dfer_0775 Dfer_0775 Dfer_0776 Dfer_0776 Dfer_1102 Dfer_1102 Dfer_1422 Dfer_1422 Dfer_1423 Dfer_1423 Dfer_1495 Dfer_1495 Dfer_1496 Dfer_1496 Dfer_1566 Dfer_1566 Dfer_1567 Dfer_1567 Dfer_1624 Dfer_1624 Dfer_1658 Dfer_1658 Dfer_1659 Dfer_1659 Dfer_1703 Dfer_1703 Dfer_1727 Dfer_1727 Dfer_1728 Dfer_1728 Dfer_1745 Dfer_1745 Dfer_1746 Dfer_1746 Dfer_1792 Dfer_1792 Dfer_1793 Dfer_1793 Dfer_1846 Dfer_1846 Dfer_2117 Dfer_2117 Dfer_2118 Dfer_2118 Dfer_2205 Dfer_2205 Dfer_2206 Dfer_2206 Dfer_2220 Dfer_2220 Dfer_2221 Dfer_2221 Dfer_2228 Dfer_2228 Dfer_2229 Dfer_2229 Dfer_2263 Dfer_2263 Dfer_2265 Dfer_2265 Dfer_2266 Dfer_2266 Dfer_2303 Dfer_2303 Dfer_2400 Dfer_2400 Dfer_2401 Dfer_2401 Dfer_2437 Dfer_2437 Dfer_2446 Dfer_2446 Dfer_2450 Dfer_2450 Dfer_3231 Dfer_3231 Dfer_3232 Dfer_3232 Dfer_3705 Dfer_3705 Dfer_3706 Dfer_3706 Dfer_4706 Dfer_4706 Dfer_4707 Dfer_4707 Dfer_4715 Dfer_4715 Dfer_4716 Dfer_4716 Dfer_5309 Dfer_5309 Dfer_5328 Dfer_5328 Dfer_5329 Dfer_5329 Dfer_5734 Dfer_5734
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0591RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2336 RNA polymerase ECF-type sigma factor. (233 aa)
Dfer_0592PFAM: FecR protein; KEGG: fjo:Fjoh_3252 anti-FecI sigma factor, FecR. (344 aa)
Dfer_0641anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rru:Rru_A2396 putative FecR. (339 aa)
Dfer_0642RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2336 RNA polymerase ECF-type sigma factor. (197 aa)
Dfer_0677RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: fjo:Fjoh_3947 ECF subfamily RNA polymerase sigma-24 factor. (193 aa)
Dfer_0678PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (345 aa)
Dfer_0685Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Dfer_0775anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bth:BT_0965 putative anti-sigma factor. (316 aa)
Dfer_0776RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (195 aa)
Dfer_1102PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (360 aa)
Dfer_1422PFAM: FecR protein; KEGG: fjo:Fjoh_3252 anti-FecI sigma factor, FecR. (328 aa)
Dfer_1423Transcriptional regulator, LuxR family; KEGG: bvu:BVU_1804 putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; regulatory protein LuxR; sigma-70 region 4 domain protein; SMART: regulatory protein LuxR. (180 aa)
Dfer_1495RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: bfs:BF4271 putative ECF-type RNA polymerase. (182 aa)
Dfer_1496PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (348 aa)
Dfer_1566PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (354 aa)
Dfer_1567RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor. (211 aa)
Dfer_1624anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bth:BT_2171 putative anti-sigma factor. (329 aa)
Dfer_1658PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (345 aa)
Dfer_1659RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pdi:BDI_1305 RNA polymerase ECF-type sigma factor. (203 aa)
Dfer_1703PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (365 aa)
Dfer_1727RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (180 aa)
Dfer_1728PFAM: FecR protein; KEGG: bfs:BF4131 putative anti-sigma factor. (315 aa)
Dfer_1745anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bvu:BVU_0025 putative anti-sigma factor. (329 aa)
Dfer_1746RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bfs:BF3099 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa)
Dfer_1792PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (365 aa)
Dfer_1793Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; KEGG: fjo:Fjoh_3947 ECF subfamily RNA polymerase sigma-24 factor. (203 aa)
Dfer_1846PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (360 aa)
Dfer_2117PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (368 aa)
Dfer_2118RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor. (211 aa)
Dfer_2205RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_3253 ECF subfamily RNA polymerase sigma-24 factor. (193 aa)
Dfer_2206PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (348 aa)
Dfer_2220PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (372 aa)
Dfer_2221RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bfs:BF3583 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
Dfer_2228PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (365 aa)
Dfer_2229RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bvu:BVU_2919 ECF-type sigma factor. (206 aa)
Dfer_2263anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bfs:BF2908 hypothetical protein. (335 aa)
Dfer_2265RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2477 RNA polymerase ECF-type sigma factor. (193 aa)
Dfer_2266PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (351 aa)
Dfer_2303PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (360 aa)
Dfer_2400Transcriptional regulator, LuxR family; KEGG: bfs:BF0869 putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; SMART: regulatory protein LuxR. (195 aa)
Dfer_2401PFAM: FecR protein; KEGG: fjo:Fjoh_3252 anti-FecI sigma factor, FecR. (341 aa)
Dfer_2437anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bvu:BVU_0626 putative anti-sigma factor. (344 aa)
Dfer_2446RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: bth:BT_1728 RNA polymerase ECF-type sigma factor. (203 aa)
Dfer_2450PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (365 aa)
Dfer_3231RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (170 aa)
Dfer_3232anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pdi:BDI_2075 putative anti-sigma factor. (313 aa)
Dfer_3705PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (350 aa)
Dfer_3706RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Dfer_4706Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor. (199 aa)
Dfer_4707PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (374 aa)
Dfer_4715RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_4791 ECF subfamily RNA polymerase sigma-24 factor. (221 aa)
Dfer_4716anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bvu:BVU_1057 putative anti-sigma factor. (339 aa)
Dfer_5309Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; regulatory protein LuxR; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily. (179 aa)
Dfer_5328RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_3108 RNA polymerase ECF-type sigma factor. (180 aa)
Dfer_5329anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pdi:BDI_3132 putative anti-sigma factor. (322 aa)
Dfer_5734RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: fjo:Fjoh_3947 ECF subfamily RNA polymerase sigma-24 factor. (193 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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