STRINGSTRING
Dfer_0641 Dfer_0641 Dfer_0642 Dfer_0642 Dfer_0678 Dfer_0678 Dfer_1102 Dfer_1102 Dfer_1566 Dfer_1566 Dfer_1567 Dfer_1567 Dfer_1658 Dfer_1658 Dfer_1659 Dfer_1659 Dfer_1745 Dfer_1745 Dfer_1746 Dfer_1746 Dfer_4706 Dfer_4706 Dfer_4707 Dfer_4707 Dfer_4715 Dfer_4715 Dfer_4716 Dfer_4716
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0641anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rru:Rru_A2396 putative FecR. (339 aa)
Dfer_0642RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: pdi:BDI_2336 RNA polymerase ECF-type sigma factor. (197 aa)
Dfer_0678PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (345 aa)
Dfer_1102PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (360 aa)
Dfer_1566PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (354 aa)
Dfer_1567RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor. (211 aa)
Dfer_1658PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (345 aa)
Dfer_1659RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pdi:BDI_1305 RNA polymerase ECF-type sigma factor. (203 aa)
Dfer_1745anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bvu:BVU_0025 putative anti-sigma factor. (329 aa)
Dfer_1746RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bfs:BF3099 putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (152 aa)
Dfer_4706Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: fjo:Fjoh_2896 ECF subfamily RNA polymerase sigma-24 factor. (199 aa)
Dfer_4707PFAM: FecR protein; KEGG: fjo:Fjoh_2895 anti-FecI sigma factor, FecR. (374 aa)
Dfer_4715RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: fjo:Fjoh_4791 ECF subfamily RNA polymerase sigma-24 factor. (221 aa)
Dfer_4716anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: bvu:BVU_1057 putative anti-sigma factor. (339 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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