STRINGSTRING
Dfer_0102 Dfer_0102 Dfer_0103 Dfer_0103 Dfer_0557 Dfer_0557 Dfer_0558 Dfer_0558 Dfer_0975 Dfer_0975 Dfer_1313 Dfer_1313 Dfer_1729 Dfer_1729 Dfer_1730 Dfer_1730 Dfer_1761 Dfer_1761 Dfer_2236 Dfer_2236 Dfer_2237 Dfer_2237 Dfer_2238 Dfer_2238 Dfer_2239 Dfer_2239 Dfer_2240 Dfer_2240 Dfer_2241 Dfer_2241 Dfer_2242 Dfer_2242 Dfer_3233 Dfer_3233 Dfer_4297 Dfer_4297 Dfer_4298 Dfer_4298 Dfer_4666 Dfer_4666 Dfer_4805 Dfer_4805 Dfer_5305 Dfer_5305
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0102TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cts:Ctha_1003 TonB-dependent siderophore receptor. (795 aa)
Dfer_0103KEGG: dac:Daci_3656 hypothetical protein. (78 aa)
Dfer_0557KEGG: acr:Acry_1334 ferric uptake regulator family protein. (91 aa)
Dfer_0558PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: gfo:GFO_1311 TonB-dependent outer membrane receptor. (817 aa)
Dfer_0975TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_2282 TonB-dependent siderophore receptor. (806 aa)
Dfer_1313PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: fjo:Fjoh_2283 PepSY-associated TM helix domain-containing protein. (405 aa)
Dfer_1729TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fps:FP2456 TonB-dependent outer membrane ferrichrome-iron receptor precursor. (852 aa)
Dfer_1730PFAM: PepSY-associated TM helix domain protein; KEGG: fps:FP2452 transmembrane protein. (384 aa)
Dfer_1761TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_2284 TonB-dependent siderophore receptor. (769 aa)
Dfer_2236Hypothetical protein. (96 aa)
Dfer_2237KEGG: fjo:Fjoh_4141 hypothetical protein. (77 aa)
Dfer_2238PFAM: PepSY-associated TM helix domain protein; KEGG: lic:LIC11509 cytoplasmic membrane protein. (380 aa)
Dfer_2239TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor. (789 aa)
Dfer_2240KEGG: chu:CHU_0516 hypothetical protein. (125 aa)
Dfer_2241RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: chu:CHU_0262 RNA polymerase sigma factor (RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. (165 aa)
Dfer_2242KEGG: gfo:GFO_0857 secreted protein. (436 aa)
Dfer_3233TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_2191 TonB-dependent outer membrane receptor. (907 aa)
Dfer_4297PFAM: PepSY-associated TM helix domain protein; KEGG: fjo:Fjoh_4040 PepSY-associated TM helix domain-containing protein. (410 aa)
Dfer_4298TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor. (824 aa)
Dfer_4666PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: bfs:BF4342 putative iron-regulated transmembrane protein. (385 aa)
Dfer_4805TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_3320 TonB-dependent siderophore receptor. (791 aa)
Dfer_5305PFAM: PepSY-associated TM helix domain protein; KEGG: chu:CHU_0257 sulfite reductase/membrane protein. (385 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.