STRINGSTRING
Dfer_1313 Dfer_1313 Dfer_1729 Dfer_1729 Dfer_1730 Dfer_1730 Dfer_1761 Dfer_1761 Dfer_4297 Dfer_4297 Dfer_4298 Dfer_4298 Dfer_4666 Dfer_4666 Dfer_4805 Dfer_4805
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_1313PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: fjo:Fjoh_2283 PepSY-associated TM helix domain-containing protein. (405 aa)
Dfer_1729TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fps:FP2456 TonB-dependent outer membrane ferrichrome-iron receptor precursor. (852 aa)
Dfer_1730PFAM: PepSY-associated TM helix domain protein; KEGG: fps:FP2452 transmembrane protein. (384 aa)
Dfer_1761TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_2284 TonB-dependent siderophore receptor. (769 aa)
Dfer_4297PFAM: PepSY-associated TM helix domain protein; KEGG: fjo:Fjoh_4040 PepSY-associated TM helix domain-containing protein. (410 aa)
Dfer_4298TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor. (824 aa)
Dfer_4666PFAM: Propeptide PepSY amd peptidase M4; PepSY- associated TM helix domain protein; KEGG: bfs:BF4342 putative iron-regulated transmembrane protein. (385 aa)
Dfer_4805TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_3320 TonB-dependent siderophore receptor. (791 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.