STRINGSTRING
Dfer_0654 Dfer_0654 Dfer_0914 Dfer_0914 Dfer_1056 Dfer_1056 Dfer_1158 Dfer_1158 Dfer_1197 Dfer_1197 Dfer_1303 Dfer_1303 Dfer_1402 Dfer_1402 Dfer_1456 Dfer_1456 Dfer_1649 Dfer_1649 Dfer_1651 Dfer_1651 Dfer_1670 Dfer_1670 Dfer_1733 Dfer_1733 Dfer_1734 Dfer_1734 Dfer_1735 Dfer_1735 Dfer_1736 Dfer_1736 Dfer_1737 Dfer_1737 Dfer_1738 Dfer_1738 Dfer_1739 Dfer_1739 Dfer_1750 Dfer_1750 Dfer_1751 Dfer_1751 Dfer_1833 Dfer_1833 Dfer_1834 Dfer_1834 Dfer_1835 Dfer_1835 Dfer_1862 Dfer_1862 Dfer_1886 Dfer_1886 Dfer_2104 Dfer_2104 Dfer_2168 Dfer_2168 Dfer_3677 Dfer_3677 Dfer_4283 Dfer_4283 Dfer_4301 Dfer_4301 Dfer_4511 Dfer_4511 Dfer_4762 Dfer_4762 Dfer_5279 Dfer_5279 Dfer_5280 Dfer_5280 Dfer_5281 Dfer_5281 Dfer_5347 Dfer_5347 Dfer_5451 Dfer_5451 Dfer_5452 Dfer_5452 Dfer_5551 Dfer_5551 Dfer_5736 Dfer_5736
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0654Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1151 helix-turn-helix domain- containing protein. (264 aa)
Dfer_0914Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1991 helix-turn-helix domain- containing protein. (290 aa)
Dfer_1056RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (287 aa)
Dfer_1158Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: abb:ABBFA_000249 regulatory protein. (303 aa)
Dfer_1197Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fps:FP0850 AraC family transcriptional regulator. (335 aa)
Dfer_1303Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_3893 helix-turn-helix domain- containing protein. (129 aa)
Dfer_1402Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: atc:AGR_L_1135 hypothetical protein. (288 aa)
Dfer_1456Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2992 helix-turn-helix domain- containing protein. (271 aa)
Dfer_1649Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3909 putative transcriptional regulator. (271 aa)
Dfer_1651PFAM: protein of unknown function DUF214; KEGG: gfo:GFO_0712 FtsX family membrane protein (predicted permease). (800 aa)
Dfer_1670Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_1002 transcriptional regulator, AraC family. (338 aa)
Dfer_1733Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_2301 transcriptional regulator. (322 aa)
Dfer_1734Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_2629 transcriptional regulator, AraC family. (326 aa)
Dfer_1735KEGG: fjo:Fjoh_5027 hypothetical protein. (317 aa)
Dfer_1736KEGG: nha:Nham_0657 hypothetical protein. (248 aa)
Dfer_1737Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pap:PSPA7_0972 4-hydroxyphenylacetate catabolism regulatory protein HpaA. (266 aa)
Dfer_1738Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swp:swp_4627 transcriptional regulator, AraC family. (283 aa)
Dfer_1739PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT0108 sigma-54-dependent transcriptional regulator. (479 aa)
Dfer_1750KEGG: aas:Aasi_0443 hypothetical protein. (135 aa)
Dfer_1751Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_0180 helix-turn-helix domain- containing protein. (299 aa)
Dfer_1833PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oih:OB1034 cyclohexanol dehydrogenase. (263 aa)
Dfer_1834Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cli:Clim_1434 transcriptional regulator, AraC family. (282 aa)
Dfer_1835TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pmu:PM1791 hypothetical protein; Belongs to the BCCT transporter (TC 2.A.15) family. (671 aa)
Dfer_1862Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1631 putative transcriptional regulator. (300 aa)
Dfer_1886Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (289 aa)
Dfer_2104Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bfs:BF0859 putative AraC transcriptional regulatory protein. (298 aa)
Dfer_2168Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gfo:GFO_3222 protein containing AraC type HTH domain. (325 aa)
Dfer_3677Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1991 helix-turn-helix domain- containing protein. (282 aa)
Dfer_4283Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (290 aa)
Dfer_4301Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (286 aa)
Dfer_4511Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1705 helix-turn-helix domain- containing protein. (339 aa)
Dfer_4762Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3253 AraC family transcriptional regulator. (311 aa)
Dfer_5279Hypothetical protein; KEGG: cyt:cce_3434 putative 2',5' RNA ligase. (215 aa)
Dfer_5280Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2340 helix-turn-helix domain- containing protein. (280 aa)
Dfer_5281KEGG: hch:HCH_04393 hypothetical protein. (323 aa)
Dfer_5347Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_1002 transcriptional regulator, AraC family. (332 aa)
Dfer_5451Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bph:Bphy_4013 AraC family transcriptional regulator. (270 aa)
Dfer_5452Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swp:swp_4627 transcriptional regulator, AraC family. (280 aa)
Dfer_5551Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swp:swp_2963 transcriptional regulator, AraC family. (133 aa)
Dfer_5736Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (302 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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