STRINGSTRING
Dfer_5705 Dfer_5705 Dfer_0300 Dfer_0300 Dfer_2231 Dfer_2231 Dfer_1858 Dfer_1858 Dfer_2262 Dfer_2262 Dfer_1723 Dfer_1723 Dfer_1601 Dfer_1601 Dfer_0210 Dfer_0210 Dfer_0211 Dfer_0211 Dfer_0246 Dfer_0246 Dfer_1497 Dfer_1497 Dfer_1850 Dfer_1850 Dfer_2402 Dfer_2402 Dfer_2594 Dfer_2594 Dfer_2800 Dfer_2800 Dfer_2995 Dfer_2995 Dfer_4184 Dfer_4184 Dfer_4269 Dfer_4269 Dfer_4496 Dfer_4496 Dfer_4736 Dfer_4736 Dfer_4946 Dfer_4946 Dfer_1460 Dfer_1460 Dfer_1036 Dfer_1036 Dfer_0811 Dfer_0811 Dfer_0640 Dfer_0640 Dfer_0516 Dfer_0516
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_5705PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4169 TonB-dependent receptor. (1011 aa)
Dfer_0300PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein. (1079 aa)
Dfer_2231PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4645 TonB-dependent receptor, plug. (1037 aa)
Dfer_1858PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfr:BF3437 hypothetical protein. (1026 aa)
Dfer_2262PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_0511 hypothetical protein. (1087 aa)
Dfer_1723PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_0190 hypothetical protein. (1071 aa)
Dfer_1601PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_0010 TonB-dependent outer membrane receptor. (1055 aa)
Dfer_0210TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: aas:Aasi_0303 hypothetical protein. (378 aa)
Dfer_0211TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: chu:CHU_2564 signal peptidase I; Belongs to the peptidase S26 family. (392 aa)
Dfer_0246PFAM: peptidase T2 asparaginase 2; KEGG: gfo:GFO_3399 L-asparaginase. (363 aa)
Dfer_1497PFAM: TonB-dependent receptor plug; TonB-dependent receptor; Secretin/TonB short domain; KEGG: bvu:BVU_1806 hypothetical protein. (1102 aa)
Dfer_1850PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bth:BT_2461 hypothetical protein. (1019 aa)
Dfer_2402PFAM: TonB-dependent receptor plug; TonB-dependent receptor; Secretin/TonB short domain; KEGG: bth:BT_0029 hypothetical protein. (1217 aa)
Dfer_2594N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; PFAM: peptidase T2 asparaginase 2; KEGG: xcb:XC_1195 asparaginase. (342 aa)
Dfer_2800KEGG: chu:CHU_2467 protease IV; signal peptide peptidase; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; Enoyl-CoA hydratase/isomerase. (588 aa)
Dfer_2995PFAM: Abortive infection protein; KEGG: aas:Aasi_0817 hypothetical protein. (321 aa)
Dfer_4184PFAM: TonB-dependent receptor plug; KEGG: bvu:BVU_1781 hypothetical protein. (1042 aa)
Dfer_4269PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pdi:BDI_3963 hypothetical protein. (1038 aa)
Dfer_4496PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bfs:BF0571 putative TonB-linked outer membrane receptor protein. (1031 aa)
Dfer_4736PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: bvu:BVU_1152 hypothetical protein. (1046 aa)
Dfer_4946PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1517 hypothetical protein. (1077 aa)
Dfer_1460PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: pdi:BDI_1517 hypothetical protein. (1189 aa)
Dfer_1036PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_2412 hypothetical protein. (1081 aa)
Dfer_0811PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfs:BF0536 putative outer membrane protein. (1016 aa)
Dfer_0640PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_3338 hypothetical protein. (1125 aa)
Dfer_0516PFAM: peptidase T2 asparaginase 2; KEGG: gfo:GFO_0747 L-asparaginase. (298 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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