STRINGSTRING
Dfer_3233 Dfer_3233 Dfer_4298 Dfer_4298 Dfer_4805 Dfer_4805 Dfer_0102 Dfer_0102 Dfer_0975 Dfer_0975 Dfer_1051 Dfer_1051 Dfer_1729 Dfer_1729 Dfer_1761 Dfer_1761 Dfer_2239 Dfer_2239
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_3233TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gfo:GFO_2191 TonB-dependent outer membrane receptor. (907 aa)
Dfer_4298TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor. (824 aa)
Dfer_4805TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_3320 TonB-dependent siderophore receptor. (791 aa)
Dfer_0102TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cts:Ctha_1003 TonB-dependent siderophore receptor. (795 aa)
Dfer_0975TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_2282 TonB-dependent siderophore receptor. (806 aa)
Dfer_1051Hypothetical protein; KEGG: chu:CHU_1539 integral outer membrane protein. (545 aa)
Dfer_1729TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fps:FP2456 TonB-dependent outer membrane ferrichrome-iron receptor precursor. (852 aa)
Dfer_1761TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_2284 TonB-dependent siderophore receptor. (769 aa)
Dfer_2239TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4039 TonB-dependent siderophore receptor. (789 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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