STRINGSTRING
Dfer_2443 Dfer_2443 Dfer_5323 Dfer_5323 Dfer_5322 Dfer_5322 Dfer_5289 Dfer_5289 Dfer_5275 Dfer_5275 Dfer_5054 Dfer_5054 Dfer_4806 Dfer_4806 Dfer_4536 Dfer_4536 Dfer_4211 Dfer_4211 Dfer_4177 Dfer_4177 Dfer_4112 Dfer_4112 Dfer_4105 Dfer_4105 nuoB-2 nuoB-2 Dfer_4084 Dfer_4084 Dfer_4083 Dfer_4083 Dfer_4082 Dfer_4082 nuoI nuoI nuoK-2 nuoK-2 Dfer_4037 Dfer_4037 Dfer_3971 Dfer_3971 nuoK nuoK Dfer_3897 Dfer_3897 Dfer_3702 Dfer_3702 Dfer_3610 Dfer_3610 Dfer_3568 Dfer_3568 Dfer_3477 Dfer_3477 Dfer_3474 Dfer_3474 Dfer_3473 Dfer_3473 Dfer_3471 Dfer_3471 Dfer_3470 Dfer_3470 Dfer_3467 Dfer_3467 Dfer_3466 Dfer_3466 Dfer_3236 Dfer_3236 nuoB nuoB Dfer_2203 Dfer_2203 Dfer_2188 Dfer_2188 Dfer_1978 Dfer_1978 Dfer_1787 Dfer_1787 Dfer_1785 Dfer_1785 Dfer_1595 Dfer_1595 Dfer_1508 Dfer_1508 Dfer_1484 Dfer_1484 Dfer_1472 Dfer_1472 Dfer_1356 Dfer_1356 Dfer_1334 Dfer_1334 Dfer_1198 Dfer_1198 Dfer_0759 Dfer_0759 Dfer_0728 Dfer_0728 Dfer_0700 Dfer_0700 Dfer_0692 Dfer_0692 Dfer_0690 Dfer_0690 Dfer_0477 Dfer_0477 Dfer_0441 Dfer_0441 Dfer_0333 Dfer_0333 Dfer_0080 Dfer_0080 Dfer_5388 Dfer_5388 Dfer_5332 Dfer_5332
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_2443PFAM: cytochrome c class I; KEGG: gbm:Gbem_0116 hypothetical protein. (143 aa)
Dfer_5323TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; KEGG: chu:CHU_1138 cytochrome c oxidase, cbb3-type; Belongs to the heme-copper respiratory oxidase family. (701 aa)
Dfer_5322PFAM: cytochrome c class I; KEGG: chu:CHU_1140 cytochrome c, mono- and diheme variant. (346 aa)
Dfer_5289PFAM: cytochrome c class I; KEGG: rba:RB9713 large, multifunctional secreted protein. (920 aa)
Dfer_5275KEGG: chu:CHU_2867 cytochrome c-related protein. (320 aa)
Dfer_5054PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sde:Sde_0722 transcriptional regulator, Crp/Fnr family. (1135 aa)
Dfer_4806PFAM: cytochrome c class I; KEGG: gfo:GFO_0813 C550-like class I cytochrome c. (136 aa)
Dfer_4536TIGRFAM: heme-binding protein; KEGG: rba:RB5806 hypothetical protein. (168 aa)
Dfer_4211KEGG: chu:CHU_2614 NADH:ubiquinone oxidoreductase chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (555 aa)
Dfer_4177KEGG: ote:Oter_0487 hypothetical protein. (517 aa)
Dfer_4112KEGG: chu:CHU_2203 cytochrome c oxidase, subunit III. (203 aa)
Dfer_4105Hypothetical protein. (188 aa)
nuoB-2NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (180 aa)
Dfer_4084KEGG: chu:CHU_1378 NADH dehydrogenase I chain E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit. (165 aa)
Dfer_4083NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (446 aa)
Dfer_4082PFAM: ferredoxin; KEGG: chu:CHU_1376 NADH dehydrogenase I chain G. (371 aa)
nuoINADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (197 aa)
nuoK-2NADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (103 aa)
Dfer_4037PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chu:CHU_2619 NADH:ubiquinone oxidoreductase chain I. (513 aa)
Dfer_3971TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: chu:CHU_2474 succinate dehydrogenase/fumarate reductase iron-sulfur subunit. (250 aa)
nuoKNADH-ubiquinone oxidoreductase chain 4L; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (117 aa)
Dfer_3897KEGG: chu:CHU_1370 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I). (482 aa)
Dfer_3702PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: rba:RB2693 hypothetical protein. (922 aa)
Dfer_3610Hypothetical protein; KEGG: sul:SYO3AOP1_0718 cytochrome c class I. (180 aa)
Dfer_35682-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase; KEGG: chu:CHU_2468 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase (7,8-dihydro- 6-hydroxymethylpterin-pyrophosphokinase); TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK. (163 aa)
Dfer_3477PFAM: cytochrome c class I; KEGG: chu:CHU_2213 cytochrome c, mono- and diheme variant. (425 aa)
Dfer_3474Quinol:cytochrome c oxidoreductase membrane protein; KEGG: chu:CHU_2210 hypothetical protein. (176 aa)
Dfer_3473KEGG: mxa:MXAN_5554 cytochrome c family protein. (207 aa)
Dfer_3471Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (370 aa)
Dfer_3470PFAM: cytochrome c oxidase subunit I; KEGG: chu:CHU_2206 cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family. (627 aa)
Dfer_3467PFAM: cytochrome c oxidase subunit III; KEGG: chu:CHU_2203 cytochrome c oxidase, subunit III. (195 aa)
Dfer_3466PFAM: cytochrome c oxidase subunit III; KEGG: chu:CHU_2202 cytochrome c oxidase, subunit III. (256 aa)
Dfer_3236PFAM: cytochrome c class I; KEGG: rba:RB9438 large, multifunctional secreted protein. (647 aa)
nuoBNADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (176 aa)
Dfer_2203PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein. (1091 aa)
Dfer_2188PFAM: cytochrome c class I; PKD domain containing protein; KEGG: sgr:SGR_924 hypothetical protein. (1151 aa)
Dfer_1978PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein. (772 aa)
Dfer_1787PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; KEGG: ote:Oter_2870 cytochrome c oxidase mono-heme subunit/FixO. (335 aa)
Dfer_1785KEGG: fps:FP0917 cytochrome c family protein. (131 aa)
Dfer_1595PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: sus:Acid_3952 hypothetical protein. (765 aa)
Dfer_1508Hypothetical protein. (120 aa)
Dfer_1484PFAM: PKD domain containing protein; cytochrome c class I; SMART: PKD domain containing protein; KEGG: sgr:SGR_1113 hypothetical protein. (918 aa)
Dfer_1472KEGG: fjo:Fjoh_3890 hypothetical protein. (314 aa)
Dfer_1356Hypothetical protein. (137 aa)
Dfer_1334PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; KEGG: pat:Patl_0815 hypothetical protein. (1068 aa)
Dfer_1198KEGG: lbf:LBF_3080 hypothetical protein. (292 aa)
Dfer_0759KEGG: mxa:MXAN_1569 putative cytochrome c. (296 aa)
Dfer_0728KEGG: chu:CHU_2867 cytochrome c-related protein. (321 aa)
Dfer_0700KEGG: sth:STH2945 hypothetical protein. (428 aa)
Dfer_0692KEGG: sul:SYO3AOP1_0446 cytochrome c class I. (153 aa)
Dfer_0690KEGG: gfo:GFO_1400 membrane protein. (417 aa)
Dfer_0477PFAM: deoxynucleoside kinase; KEGG: fjo:Fjoh_1482 deoxynucleoside kinase. (204 aa)
Dfer_0441Ferredoxin; KEGG: chu:CHU_2228 ferredoxin. (112 aa)
Dfer_0333PFAM: protein of unknown function DUF1549; Planctomycete cytochrome C; SMART: LamG domain protein jellyroll fold domain protein; KEGG: pat:Patl_0815 hypothetical protein. (1074 aa)
Dfer_0080KEGG: chu:CHU_2867 cytochrome c-related protein. (324 aa)
Dfer_5388KEGG: ank:AnaeK_3055 putative lipoprotein. (202 aa)
Dfer_5332PFAM: PKD domain containing protein; Carbohydrate binding family 6; cytochrome c class I; SMART: PKD domain containing protein; cellulose binding type IV; KEGG: sen:SACE_2991 secreted glycosyl hydrolase. (909 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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