STRINGSTRING
Dfer_5761 Dfer_5761 Dfer_3668 Dfer_3668 Dfer_3185 Dfer_3185 Dfer_2246 Dfer_2246 Dfer_2158 Dfer_2158 Dfer_1503 Dfer_1503 Dfer_1308 Dfer_1308 Dfer_1089 Dfer_1089 Dfer_0990 Dfer_0990 Dfer_0854 Dfer_0854 Dfer_0791 Dfer_0791 Dfer_0393 Dfer_0393 Dfer_0149 Dfer_0149
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_5761KEGG: chu:CHU_2784 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; SMART: response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein; ATP- binding region ATPase domain protein. (1204 aa)
Dfer_3668PFAM: GAF domain protein; KEGG: mms:mma_0248 GAF domain-containing protein. (161 aa)
Dfer_3185Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: fjo:Fjoh_3936 multi-sensor signal transduction histidine kinase. (762 aa)
Dfer_2246Multi-sensor hybrid histidine kinase; KEGG: scl:sce0929 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; PAS fold- 3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein. (1084 aa)
Dfer_2158GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: rlt:Rleg2_5176 GAF sensor signal transduction histidine kinase. (414 aa)
Dfer_1503Putative phytochrome sensor protein; PFAM: histidine kinase internal region; Two component regulator propeller; GAF domain protein; Two component regulator three Y domain protein; SMART: GAF domain protein; KEGG: cps:CPS_2607 GGDEF domain-containing protein. (1182 aa)
Dfer_1308KEGG: cts:Ctha_2368 hypothetical protein. (779 aa)
Dfer_1089PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aci:ACIAD3176 putative sensory transduction histidine kinase. (409 aa)
Dfer_0990KEGG: cps:CPS_3258 sensory box protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat- containing protein. (758 aa)
Dfer_0854PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; serine/threonine protein kinase; GAF domain protein; KEGG: pth:PTH_0142 hypothetical protein. (1871 aa)
Dfer_0791GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; KEGG: psb:Psyr_3773 GAF:ATP-binding region, ATPase- like:histidine kinase A, N-terminal. (415 aa)
Dfer_0393Histidine kinase; KEGG: fjo:Fjoh_3354 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein. (1200 aa)
Dfer_0149Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; Two component regulator propeller; Two component regulator three Y domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response. (1192 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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