STRINGSTRING
Dfer_4457 Dfer_4457 Dfer_2353 Dfer_2353 Dfer_1754 Dfer_1754 Dfer_2077 Dfer_2077 Dfer_1732 Dfer_1732 Dfer_1726 Dfer_1726 Dfer_1710 Dfer_1710 Dfer_1628 Dfer_1628 Dfer_1611 Dfer_1611 Dfer_1574 Dfer_1574 Dfer_1378 Dfer_1378 Dfer_1014 Dfer_1014 Dfer_0886 Dfer_0886 Dfer_0869 Dfer_0869 Dfer_0761 Dfer_0761 Dfer_0725 Dfer_0725 Dfer_0721 Dfer_0721 Dfer_0311 Dfer_0311 Dfer_4957 Dfer_4957
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_4457Transcriptional regulator, LuxR family; PFAM: Two component regulator three Y domain protein; regulatory protein LuxR; Two component regulator propeller; SMART: regulatory protein LuxR; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein. (966 aa)
Dfer_2353Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: sus:Acid_4777 histidine kinase. (1021 aa)
Dfer_1754KEGG: fjo:Fjoh_3862 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; helix- turn-helix- domain containing protein AraC type; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; helix-turn-helix- domain containing protein AraC type; histidine kinase A domain protein. (1344 aa)
Dfer_2077KEGG: aci:ACIAD3520 hypothetical protein. (528 aa)
Dfer_1732Hypothetical protein; KEGG: hau:Haur_4041 serine/threonine protein kinase. (536 aa)
Dfer_1726PFAM: peptidase C1A papain; SMART: peptidase C1A papain; Pyrrolo-quinoline quinone; KEGG: cbe:Cbei_3836 peptidase C1A, papain. (789 aa)
Dfer_1710Hypothetical protein. (403 aa)
Dfer_1628PFAM: peptidase C1A papain; Pyrrolo-quinoline quinone; SMART: peptidase C1A papain; Pyrrolo-quinoline quinone; KEGG: lbf:LBF_3081 cysteine protease. (820 aa)
Dfer_1611Glycerol dehydrogenase (acceptor); KEGG: swi:Swit_1900 quinoprotein glucose dehydrogenase; PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone. (722 aa)
Dfer_1574Histidine kinase; KEGG: pdi:BDI_3101 two-component system sensor histidine kinase/response regulator, hybrid; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein. (1378 aa)
Dfer_1378Quinoprotein glucose dehydrogenase; KEGG: ote:Oter_0062 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone. (769 aa)
Dfer_1014Quinoprotein glucose dehydrogenase; KEGG: ote:Oter_0062 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone. (732 aa)
Dfer_0886WD40-like protein; KEGG: nph:NP4750A cell surface protein/lipoprotein. (433 aa)
Dfer_0869Hypothetical protein; KEGG: mhu:Mhun_0418 PKD. (477 aa)
Dfer_0761SMART: Pyrrolo-quinoline quinone; KEGG: rha:RHA1_ro06456 hypothetical protein. (421 aa)
Dfer_0725Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Two component regulator three Y domain protein; Two component regulator propeller; KEGG: bth:BT_4663 two-component system sensor histidine kinase/response. (1036 aa)
Dfer_0721Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_4738 histidine kinase. (989 aa)
Dfer_0311PFAM: Pyrrolo-quinoline quinone; cytochrome c class I; SMART: Pyrrolo-quinoline quinone; KEGG: ote:Oter_0062 pyrrolo-quinoline quinone. (705 aa)
Dfer_4957PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: ote:Oter_0062 pyrrolo-quinoline quinone. (698 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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