STRINGSTRING
Dfer_4301 Dfer_4301 Dfer_1834 Dfer_1834 Dfer_1862 Dfer_1862 Dfer_0071 Dfer_0071 Dfer_0388 Dfer_0388 Dfer_0654 Dfer_0654 Dfer_0841 Dfer_0841 Dfer_0873 Dfer_0873 Dfer_1158 Dfer_1158 Dfer_1197 Dfer_1197 Dfer_1303 Dfer_1303 Dfer_1306 Dfer_1306 Dfer_1330 Dfer_1330 Dfer_1402 Dfer_1402 Dfer_1426 Dfer_1426 Dfer_1456 Dfer_1456 Dfer_4113 Dfer_4113 Dfer_3677 Dfer_3677 Dfer_2168 Dfer_2168 Dfer_2104 Dfer_2104 Dfer_2046 Dfer_2046 Dfer_1947 Dfer_1947 Dfer_1670 Dfer_1670 Dfer_1734 Dfer_1734 Dfer_1886 Dfer_1886 Dfer_2291 Dfer_2291 Dfer_4511 Dfer_4511
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_4301Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (286 aa)
Dfer_1834Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cli:Clim_1434 transcriptional regulator, AraC family. (282 aa)
Dfer_1862Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1631 putative transcriptional regulator. (300 aa)
Dfer_0071Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2943 helix-turn-helix domain- containing protein. (308 aa)
Dfer_0388Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3253 AraC family transcriptional regulator. (290 aa)
Dfer_0654Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1151 helix-turn-helix domain- containing protein. (264 aa)
Dfer_0841Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4692 helix-turn-helix domain- containing protein. (302 aa)
Dfer_0873Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bth:BT_1540 transcriptional regulator. (286 aa)
Dfer_1158Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: abb:ABBFA_000249 regulatory protein. (303 aa)
Dfer_1197Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fps:FP0850 AraC family transcriptional regulator. (335 aa)
Dfer_1303Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_3893 helix-turn-helix domain- containing protein. (129 aa)
Dfer_1306Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_0780 transcriptional regulator, AraC family. (305 aa)
Dfer_1330Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3787 transcriptional regulator. (326 aa)
Dfer_1402Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: atc:AGR_L_1135 hypothetical protein. (288 aa)
Dfer_1426Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cli:Clim_1434 transcriptional regulator, AraC family. (292 aa)
Dfer_1456Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2992 helix-turn-helix domain- containing protein. (271 aa)
Dfer_4113Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swd:Swoo_3057 AraC family transcriptional regulator. (375 aa)
Dfer_3677Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1991 helix-turn-helix domain- containing protein. (282 aa)
Dfer_2168Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: gfo:GFO_3222 protein containing AraC type HTH domain. (325 aa)
Dfer_2104Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bfs:BF0859 putative AraC transcriptional regulatory protein. (298 aa)
Dfer_2046Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_3380 helix-turn-helix domain- containing protein. (287 aa)
Dfer_1947Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; SMART: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: fjo:Fjoh_3862 histidine kinase. (252 aa)
Dfer_1670Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_1002 transcriptional regulator, AraC family. (338 aa)
Dfer_1734Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cts:Ctha_2629 transcriptional regulator, AraC family. (326 aa)
Dfer_1886Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (289 aa)
Dfer_2291Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator. (292 aa)
Dfer_4511Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_1705 helix-turn-helix domain- containing protein. (339 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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