STRINGSTRING
Dfer_0388 Dfer_0388 Dfer_0769 Dfer_0769 Dfer_0900 Dfer_0900 Dfer_0924 Dfer_0924 Dfer_1116 Dfer_1116 Dfer_1158 Dfer_1158 Dfer_1426 Dfer_1426 Dfer_1443 Dfer_1443 Dfer_1456 Dfer_1456 Dfer_1515 Dfer_1515 Dfer_1751 Dfer_1751 Dfer_1862 Dfer_1862 Dfer_2104 Dfer_2104 Dfer_2197 Dfer_2197 Dfer_2291 Dfer_2291 Dfer_4762 Dfer_4762 Dfer_5406 Dfer_5406 Dfer_5462 Dfer_5462 Dfer_5555 Dfer_5555 Dfer_5736 Dfer_5736
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_0388Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3253 AraC family transcriptional regulator. (290 aa)
Dfer_0769Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_3374 helix-turn-helix domain- containing protein. (292 aa)
Dfer_0900Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_0156 helix-turn-helix domain- containing protein. (269 aa)
Dfer_0924Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4411 helix-turn-helix domain- containing protein. (267 aa)
Dfer_1116Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4278 helix-turn-helix domain- containing protein. (300 aa)
Dfer_1158Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: abb:ABBFA_000249 regulatory protein. (303 aa)
Dfer_1426Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cli:Clim_1434 transcriptional regulator, AraC family. (292 aa)
Dfer_1443Transcriptional regulator, AraC family; KEGG: bfr:BF3490 transcription regulator. (246 aa)
Dfer_1456Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_2992 helix-turn-helix domain- containing protein. (271 aa)
Dfer_1515Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4411 helix-turn-helix domain- containing protein. (265 aa)
Dfer_1751Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_0180 helix-turn-helix domain- containing protein. (299 aa)
Dfer_1862Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1631 putative transcriptional regulator. (300 aa)
Dfer_2104Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bfs:BF0859 putative AraC transcriptional regulatory protein. (298 aa)
Dfer_2197Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3253 AraC family transcriptional regulator. (282 aa)
Dfer_2291Transcriptional regulator, AraC family; PFAM: AraC protein arabinose-binding/dimerisation; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_1324 transcriptional regulator. (292 aa)
Dfer_4762Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: chu:CHU_3253 AraC family transcriptional regulator. (311 aa)
Dfer_5406Hypothetical protein; KEGG: bfr:BF0652 putative transcriptional regulator. (269 aa)
Dfer_5462Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_0156 helix-turn-helix domain- containing protein. (261 aa)
Dfer_5555Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: fjo:Fjoh_4000 helix-turn-helix domain- containing protein. (271 aa)
Dfer_5736Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pdi:BDI_3290 transcriptional regulator. (302 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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