STRINGSTRING
Dfer_2280 Dfer_2280 Dfer_2391 Dfer_2391 Dfer_5543 Dfer_5543 Dfer_5597 Dfer_5597
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dfer_2280Hypothetical protein; KEGG: rfr:Rfer_1456 diguanylate cyclase. (269 aa)
Dfer_2391PFAM: Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: chu:CHU_2796 phosphoglycerate transport; protein for signal transmission. (726 aa)
Dfer_5543PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: fjo:Fjoh_0560 histidine kinase. (637 aa)
Dfer_5597PFAM: Diverse 7TM receptor transmembrane region; Diverse 7TM receptor extracellular region 2; KEGG: chu:CHU_1654 chromosome segregation ATPase; intracellular signalling protein. (634 aa)
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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